Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chd3B1AR17 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Chd3B1AR17 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chd3B1AR17 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chd3B1AR17 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chd3B1AR17 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Chd3B1AR17 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chd3B1AR17 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chd3B1AR17 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
Chd3B1AR17 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chd3B1AR17 Gm19721-201ENSMUST00000195284 1764 ntBASIC17.13■□□□□ 0.33
Chd3B1AR17 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.13■□□□□ 0.33
Chd3B1AR17 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chd3B1AR17 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chd3B1AR17 Gm5828-201ENSMUST00000071842 1860 ntBASIC17.13■□□□□ 0.33
Chd3B1AR17 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Chd3B1AR17 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC17.12■□□□□ 0.33
Chd3B1AR17 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chd3B1AR17 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chd3B1AR17 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chd3B1AR17 Gm10013-201ENSMUST00000106074 672 ntBASIC17.12■□□□□ 0.33
Chd3B1AR17 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Chd3B1AR17 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chd3B1AR17 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC17.12■□□□□ 0.33
Chd3B1AR17 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC17.12■□□□□ 0.33
Chd3B1AR17 Gm23634-201ENSMUST00000175071 91 ntBASIC17.12■□□□□ 0.33
Chd3B1AR17 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Chd3B1AR17 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chd3B1AR17 Spsb2-203ENSMUST00000112473 1322 ntBASIC17.12■□□□□ 0.33
Chd3B1AR17 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Chd3B1AR17 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chd3B1AR17 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Chd3B1AR17 Gm2274-201ENSMUST00000184539 609 ntBASIC17.11■□□□□ 0.33
Chd3B1AR17 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC17.11■□□□□ 0.33
Chd3B1AR17 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC17.11■□□□□ 0.33
Chd3B1AR17 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Chd3B1AR17 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chd3B1AR17 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chd3B1AR17 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chd3B1AR17 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC17.11■□□□□ 0.33
Chd3B1AR17 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chd3B1AR17 Mir8112-201ENSMUST00000184382 131 ntBASIC17.11■□□□□ 0.33
Chd3B1AR17 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC17.11■□□□□ 0.33
Chd3B1AR17 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chd3B1AR17 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Chd3B1AR17 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chd3B1AR17 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Chd3B1AR17 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd3B1AR17 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 Gm16061-201ENSMUST00000122167 857 ntBASIC17.09■□□□□ 0.33
Chd3B1AR17 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 Gm9731-201ENSMUST00000209480 747 ntBASIC17.09■□□□□ 0.33
Chd3B1AR17 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC17.09■□□□□ 0.33
Chd3B1AR17 Gm7791-201ENSMUST00000219066 539 ntBASIC17.09■□□□□ 0.33
Chd3B1AR17 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC17.09■□□□□ 0.33
Chd3B1AR17 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Chd3B1AR17 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.09■□□□□ 0.33
Chd3B1AR17 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Chd3B1AR17 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC17.09■□□□□ 0.33
Chd3B1AR17 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.09■□□□□ 0.33
Chd3B1AR17 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.09■□□□□ 0.33
Chd3B1AR17 Gm9694-201ENSMUST00000193347 1189 ntBASIC17.09■□□□□ 0.33
Chd3B1AR17 Gm7370-201ENSMUST00000219471 767 ntBASIC17.09■□□□□ 0.33
Chd3B1AR17 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd3B1AR17 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Chd3B1AR17 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
Chd3B1AR17 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
Chd3B1AR17 Gm24841-201ENSMUST00000158676 357 ntBASIC17.08■□□□□ 0.33
Chd3B1AR17 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Chd3B1AR17 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms