Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm11914-201ENSMUST00000117094 507 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm14786-201ENSMUST00000117127 944 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm15021-201ENSMUST00000117832 742 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm14388-201ENSMUST00000118119 477 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm15762-201ENSMUST00000126447 333 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm14435-202ENSMUST00000127687 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm3160-201ENSMUST00000128343 607 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Hba-ps4-201ENSMUST00000128900 447 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Junos-205ENSMUST00000130684 614 ntTSL 3 BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm23465-201ENSMUST00000157134 262 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm16545-201ENSMUST00000161968 463 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm5263-201ENSMUST00000163646 601 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm15143-201ENSMUST00000178180 714 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 1700010H22Rik-202ENSMUST00000187592 1003 ntTSL 5 BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 4930420N18Rik-201ENSMUST00000191831 676 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm32877-201ENSMUST00000197419 709 ntTSL 5 BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gng12-208ENSMUST00000204511 739 ntTSL 5 BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm45499-201ENSMUST00000211656 280 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm18487-201ENSMUST00000215826 878 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 AC156639.1-201ENSMUST00000216503 660 ntTSL 3 BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 AC158686.2-201ENSMUST00000218599 976 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 AC158641.1-201ENSMUST00000218933 229 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 AC154441.1-201ENSMUST00000223653 1006 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 AC117656.3-205ENSMUST00000224606 1205 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 CT025552.2-201ENSMUST00000225497 317 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Mir28a-201ENSMUST00000083560 86 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm23875-201ENSMUST00000083711 318 ntBASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Olfr1288-202ENSMUST00000214816 1326 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Olfr1205-202ENSMUST00000215929 6149 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Olfr741-202ENSMUST00000205518 3406 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Slfn8-202ENSMUST00000092838 3529 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Gm16294-201ENSMUST00000070382 1459 ntTSL 2 BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Pramel6-201ENSMUST00000026956 1540 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 Zfp11-201ENSMUST00000049778 3929 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
Trim3Q9R1R2 AL589737.1-201ENSMUST00000221163 2763 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm42447-201ENSMUST00000200102 2903 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 AI314180-203ENSMUST00000107557 4946 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm38057-201ENSMUST00000195551 3203 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Vmn1r169-203ENSMUST00000227547 2322 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Fam135a-206ENSMUST00000187369 4976 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm14933-201ENSMUST00000118840 481 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm12757-201ENSMUST00000119465 800 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm4852-201ENSMUST00000121202 729 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 1700061F12Rik-201ENSMUST00000132414 876 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Cldn34-ps-201ENSMUST00000145498 600 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm26001-201ENSMUST00000157989 103 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Mir1946a-201ENSMUST00000158360 134 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm25606-201ENSMUST00000158363 95 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm23385-201ENSMUST00000158592 295 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm6650-201ENSMUST00000166710 614 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm4181-201ENSMUST00000170249 898 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm17133-201ENSMUST00000170636 289 ntTSL 3 BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm22646-201ENSMUST00000175130 115 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm27883-201ENSMUST00000183941 102 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm27805-201ENSMUST00000184513 79 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm38283-201ENSMUST00000193041 695 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm37670-201ENSMUST00000193622 229 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm37209-201ENSMUST00000194109 1276 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm28724-202ENSMUST00000194218 295 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm43316-201ENSMUST00000197252 1295 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Trdv3-201ENSMUST00000198551 309 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm44865-201ENSMUST00000207240 531 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Olfr1455-ps1-201ENSMUST00000208608 771 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Sult2a7-202ENSMUST00000209744 792 ntTSL 5 BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 AC156504.1-201ENSMUST00000214608 157 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 CT486006.1-201ENSMUST00000216797 227 ntTSL 5 BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 AC154635.1-201ENSMUST00000221433 400 ntTSL 3 BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 AC154184.2-201ENSMUST00000225335 349 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Vmn1r35-201ENSMUST00000071414 891 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Olfr114-201ENSMUST00000076914 1000 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Olfr1136-201ENSMUST00000077471 1067 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Olfr1162-201ENSMUST00000099837 945 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Gm12667-201ENSMUST00000118299 1332 ntBASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Vmn1r171-204ENSMUST00000226733 2918 ntAPPRIS ALT2 BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Ano5-201ENSMUST00000043944 7785 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
Trim3Q9R1R2 Cdh10-201ENSMUST00000040562 3407 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
Trim3Q9R1R2 AC129085.3-201ENSMUST00000225686 1705 ntBASIC4.09□□□□□ -1.76
Trim3Q9R1R2 Gm36927-201ENSMUST00000192504 1841 ntBASIC4.09□□□□□ -1.76
Trim3Q9R1R2 Zp3r-201ENSMUST00000039862 2042 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.76
Trim3Q9R1R2 Ddx3y-201ENSMUST00000091190 4600 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
Trim3Q9R1R2 Vmn2r46-201ENSMUST00000171523 2430 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
Trim3Q9R1R2 AC091683.1-201ENSMUST00000222307 2446 ntBASIC4.09□□□□□ -1.76
Trim3Q9R1R2 Neb-202ENSMUST00000036934 22489 ntAPPRIS P2 TSL 5 BASIC4.09□□□□□ -1.76
Trim3Q9R1R2 Olfr822-202ENSMUST00000216879 2663 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
Trim3Q9R1R2 4921501E09Rik-201ENSMUST00000024121 3916 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Mapk8-203ENSMUST00000111943 1310 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Gm15148-201ENSMUST00000117602 156 ntBASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Gm15926-201ENSMUST00000120492 550 ntBASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Gm13557-201ENSMUST00000120771 382 ntBASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Gm13366-201ENSMUST00000122198 970 ntBASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Gm24380-201ENSMUST00000122696 324 ntBASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Gm12224-202ENSMUST00000127107 726 ntTSL 3 BASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Gm10059-201ENSMUST00000131139 171 ntBASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Gm13371-201ENSMUST00000137756 469 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Gm10662-201ENSMUST00000168053 942 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Cldn34c1-206ENSMUST00000169445 705 ntAPPRIS P3 TSL 5 BASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Trim30b-205ENSMUST00000171830 2771 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Gm18560-201ENSMUST00000173463 1123 ntBASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Vmn2r-ps5-201ENSMUST00000175971 2730 ntBASIC4.08□□□□□ -1.76
Trim3Q9R1R2 Obox4-ps26-201ENSMUST00000176368 724 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 76,532 protein–RNA pairs in 75 ms