Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm25920-201ENSMUST00000158307 99 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm23117-201ENSMUST00000158482 108 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Nedd8-202ENSMUST00000163750 514 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21842-201ENSMUST00000177552 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21626-201ENSMUST00000177791 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21562-201ENSMUST00000177888 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21539-201ENSMUST00000177925 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21599-201ENSMUST00000178249 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21914-201ENSMUST00000178452 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21723-201ENSMUST00000178692 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21916-201ENSMUST00000178771 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21801-201ENSMUST00000178865 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21633-201ENSMUST00000178941 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21821-201ENSMUST00000179646 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21588-201ENSMUST00000180074 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21780-201ENSMUST00000180128 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21572-201ENSMUST00000180134 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm21529-201ENSMUST00000180175 498 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm18828-202ENSMUST00000181035 310 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Ighv13-2-202ENSMUST00000183954 302 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm29370-202ENSMUST00000187476 499 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm9127-201ENSMUST00000188041 985 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Faiml-202ENSMUST00000188555 560 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm19498-201ENSMUST00000191128 331 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm29508-202ENSMUST00000191414 710 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm38044-201ENSMUST00000192964 487 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm38040-201ENSMUST00000193505 225 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm42707-202ENSMUST00000196668 618 ntTSL 3 BASIC6.73□□□□□ -1.33
Rnf40Q3U319 Obox4-ps25-201ENSMUST00000199090 210 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm20052-204ENSMUST00000202443 648 ntTSL 2 BASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm5306-201ENSMUST00000203325 757 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Olfr511-ps1-201ENSMUST00000207188 217 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm29785-201ENSMUST00000217033 383 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 AC125531.1-201ENSMUST00000219849 221 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm18628-201ENSMUST00000220584 475 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 AC122327.2-201ENSMUST00000220883 120 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 AC211878.1-201ENSMUST00000221668 474 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 AC122327.3-201ENSMUST00000221852 120 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 AC124687.3-201ENSMUST00000222865 875 ntTSL 5 BASIC6.73□□□□□ -1.33
Rnf40Q3U319 AC166341.1-201ENSMUST00000223360 105 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 AC165284.1-201ENSMUST00000228614 458 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Rpl27a-ps2-201ENSMUST00000080234 450 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Mir24-2-201ENSMUST00000083607 107 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Cntnap2-202ENSMUST00000114641 9827 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
Rnf40Q3U319 Ugt1a7c-202ENSMUST00000113135 3302 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
Rnf40Q3U319 Ifi208-201ENSMUST00000085876 2990 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
Rnf40Q3U319 AC120375.1-201ENSMUST00000227034 3612 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Tex28-202ENSMUST00000114328 1421 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
Rnf40Q3U319 Cnga1-201ENSMUST00000087213 2739 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
Rnf40Q3U319 AC154755.2-201ENSMUST00000224384 2857 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Copg2-201ENSMUST00000048774 3961 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
Rnf40Q3U319 AC154354.1-201ENSMUST00000224585 2109 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gramd2-203ENSMUST00000128944 3705 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
Rnf40Q3U319 Gm18908-201ENSMUST00000207125 1483 ntBASIC6.73□□□□□ -1.33
Rnf40Q3U319 AC124516.3-201ENSMUST00000221302 3613 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Dram2-203ENSMUST00000121034 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Rnf40Q3U319 AC156031.1-201ENSMUST00000217288 2555 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 4930505O20Rik-201ENSMUST00000142188 1758 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm5891-202ENSMUST00000186212 2495 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm10662-202ENSMUST00000186928 2495 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Olfr670-202ENSMUST00000214216 3729 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm4211-201ENSMUST00000181103 2220 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm13084-201ENSMUST00000075045 1805 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Naip3-201ENSMUST00000118082 4208 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Ighv1-84-201ENSMUST00000103551 351 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm14613-201ENSMUST00000122239 752 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm22718-201ENSMUST00000122701 315 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 4930586N03Rik-201ENSMUST00000122940 881 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm16095-201ENSMUST00000128235 253 ntTSL 5 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 4930594O21Rik-202ENSMUST00000144981 682 ntTSL 3 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Mir1962-201ENSMUST00000157516 121 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm26182-201ENSMUST00000157688 116 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Zfp169-202ENSMUST00000167682 411 ntTSL 5 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm4202-201ENSMUST00000169025 733 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Wdr64-202ENSMUST00000171939 3823 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm27019-201ENSMUST00000183056 404 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Mir378d-201ENSMUST00000184232 110 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm36816-202ENSMUST00000205197 504 ntTSL 5 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm29918-202ENSMUST00000206036 258 ntTSL 5 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm45156-201ENSMUST00000207255 439 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm4587-201ENSMUST00000209135 637 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Lnp1-201ENSMUST00000210579 671 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm45704-201ENSMUST00000212582 403 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm2774-201ENSMUST00000213650 1165 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm31698-202ENSMUST00000214385 527 ntTSL 5 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm9289-201ENSMUST00000221269 606 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 AC139750.2-201ENSMUST00000224424 386 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 CT025630.2-201ENSMUST00000228293 487 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm5316-201ENSMUST00000050391 270 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Olfr648-201ENSMUST00000052659 951 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Ccr1l1-201ENSMUST00000071404 1166 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Lats2-203ENSMUST00000077981 786 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Tnfrsf22-202ENSMUST00000084396 564 ntAPPRIS P3 TSL 2 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Wfdc10-201ENSMUST00000094344 459 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm17199-201ENSMUST00000097296 416 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 Ctla4-202ENSMUST00000097720 614 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Gm37342-201ENSMUST00000194588 4965 ntBASIC6.72□□□□□ -1.33
Rnf40Q3U319 9330111N05Rik-201ENSMUST00000180409 1407 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Serpina7-202ENSMUST00000060824 1895 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
Rnf40Q3U319 Dlx6os1-201ENSMUST00000159568 4608 ntTSL 5 BASIC6.72□□□□□ -1.33
Retrieved 100 of 76,532 protein–RNA pairs in 78.2 ms