Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm25667-201ENSMUST00000157701 275 ntBASIC6.62□□□□□ -1.35
Ccdc88bQ4QRL3 Cldn34c1-206ENSMUST00000169445 705 ntAPPRIS P3 TSL 5 BASIC6.62□□□□□ -1.35
Ccdc88bQ4QRL3 Gm20476-201ENSMUST00000172644 492 ntTSL 2 BASIC6.62□□□□□ -1.35
Ccdc88bQ4QRL3 Gm20812-201ENSMUST00000179220 684 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
Ccdc88bQ4QRL3 Gm7142-201ENSMUST00000194232 586 ntBASIC6.62□□□□□ -1.35
Ccdc88bQ4QRL3 Znrd1as-204ENSMUST00000209623 1218 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
Ccdc88bQ4QRL3 CT010511.1-201ENSMUST00000224570 315 ntBASIC6.62□□□□□ -1.35
Ccdc88bQ4QRL3 Gm14325-201ENSMUST00000108939 1576 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
Ccdc88bQ4QRL3 Gm37236-201ENSMUST00000193670 3249 ntBASIC6.62□□□□□ -1.35
Ccdc88bQ4QRL3 Olfr1501-203ENSMUST00000215350 4395 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
Ccdc88bQ4QRL3 Ocrl-202ENSMUST00000115013 2910 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
Ccdc88bQ4QRL3 Tor1aip1-210ENSMUST00000169241 3716 ntAPPRIS ALT2 TSL 3 BASIC6.62□□□□□ -1.35
Ccdc88bQ4QRL3 9330132A10Rik-201ENSMUST00000059118 3727 ntBASIC6.62□□□□□ -1.35
Ccdc88bQ4QRL3 Gm6710-202ENSMUST00000109012 1665 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 Gm13961-201ENSMUST00000119282 4772 ntBASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 Gm14739-201ENSMUST00000120424 802 ntBASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 Olfr1118-201ENSMUST00000121296 996 ntAPPRIS P2 BASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 2810403D21Rik-203ENSMUST00000131640 546 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 Gm11281-201ENSMUST00000141391 576 ntBASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 Meis1-206ENSMUST00000144988 7553 ntTSL 2 BASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 Gm6058-201ENSMUST00000154261 399 ntBASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 Gm22531-201ENSMUST00000158819 140 ntBASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 Gm14391-206ENSMUST00000165892 1665 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 Gm37830-201ENSMUST00000195282 837 ntTSL 5 BASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 Gm33609-201ENSMUST00000198559 2694 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 Olfr875-202ENSMUST00000215128 2039 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 Gm46199-201ENSMUST00000220373 1693 ntBASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 AC154727.1-201ENSMUST00000226537 499 ntBASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 AC121898.1-201ENSMUST00000227599 288 ntBASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 Lair1-201ENSMUST00000068865 6828 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 AC123705.2-201ENSMUST00000221653 2009 ntBASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 AC152162.1-201ENSMUST00000225910 2917 ntBASIC6.61□□□□□ -1.35
Ccdc88bQ4QRL3 CAAA01194877.1-201ENSMUST00000213137 4233 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Igkv1-110-201ENSMUST00000103321 401 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Spink2-202ENSMUST00000120429 594 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm13173-201ENSMUST00000151703 441 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm14246-201ENSMUST00000155173 680 ntTSL 3 BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 AV026068-203ENSMUST00000185946 668 ntTSL 3 BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm45245-201ENSMUST00000210082 376 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm6929-201ENSMUST00000210930 468 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm15262-202ENSMUST00000207320 5010 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 E330016L19Rik-201ENSMUST00000140614 1959 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Olfr657-202ENSMUST00000213297 1948 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 AC134596.1-201ENSMUST00000222016 1922 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 AC154548.1-201ENSMUST00000225844 3838 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 C130073E24Rik-202ENSMUST00000211313 14112 ntTSL 5 BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Fbxw16-201ENSMUST00000084984 1497 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 C87414-206ENSMUST00000162964 2852 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Olfr395-202ENSMUST00000215690 4275 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Pkhd1-201ENSMUST00000088448 12935 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Nat1-201ENSMUST00000026677 1347 ntAPPRIS P2 BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm44532-201ENSMUST00000207723 2598 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Efhc2-201ENSMUST00000026014 2554 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm23271-201ENSMUST00000104052 124 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm11393-201ENSMUST00000118019 288 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Ifna-ps1-201ENSMUST00000119856 555 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm6027-201ENSMUST00000121467 756 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm13335-201ENSMUST00000129994 471 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm23755-201ENSMUST00000157578 343 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Vmn2r-ps132-201ENSMUST00000176738 651 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm28190-201ENSMUST00000189766 722 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 2610012C04Rik-201ENSMUST00000193434 1023 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm43424-201ENSMUST00000200484 253 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm8035-201ENSMUST00000204625 687 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 AC161424.1-202ENSMUST00000213570 767 ntTSL 3 BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 AL772397.1-201ENSMUST00000216707 606 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 AC131117.1-201ENSMUST00000225154 1171 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 CT030182.3-201ENSMUST00000225986 582 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 AC137871.2-201ENSMUST00000226482 289 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 CT025536.1-201ENSMUST00000226744 844 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Gm24147-201ENSMUST00000082763 144 ntBASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Olfr1209-202ENSMUST00000213136 5611 ntAPPRIS P1 TSL 3 BASIC6.6□□□□□ -1.35
Ccdc88bQ4QRL3 Kif20b-201ENSMUST00000087341 5564 ntAPPRIS P2 TSL 5 BASIC6.59□□□□□ -1.35
Ccdc88bQ4QRL3 Olfr1316-202ENSMUST00000213696 4184 ntAPPRIS ALT1 TSL 5 BASIC6.59□□□□□ -1.35
Ccdc88bQ4QRL3 Olfr112-205ENSMUST00000213274 3558 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
Ccdc88bQ4QRL3 Dbpht2-202ENSMUST00000221311 5341 ntBASIC6.59□□□□□ -1.35
Ccdc88bQ4QRL3 Gm37655-201ENSMUST00000193968 4123 ntBASIC6.59□□□□□ -1.35
Ccdc88bQ4QRL3 Gm37176-201ENSMUST00000193300 4051 ntBASIC6.59□□□□□ -1.35
Ccdc88bQ4QRL3 Cyp3a11-201ENSMUST00000035918 2344 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
Ccdc88bQ4QRL3 AI987944-204ENSMUST00000206801 1701 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
Ccdc88bQ4QRL3 Akap11-201ENSMUST00000022593 5688 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
Ccdc88bQ4QRL3 Il22ra2-201ENSMUST00000036564 2498 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
Ccdc88bQ4QRL3 Gm21037-201ENSMUST00000209086 2608 ntBASIC6.59□□□□□ -1.35
Ccdc88bQ4QRL3 Gm14806-201ENSMUST00000116606 2110 ntBASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Gm22320-201ENSMUST00000157149 312 ntBASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Mpc1-ps-201ENSMUST00000181662 330 ntBASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Gm27036-201ENSMUST00000182465 980 ntBASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 1700109I08Rik-201ENSMUST00000185680 396 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Gm44320-201ENSMUST00000199276 86 ntBASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Gm44748-201ENSMUST00000206040 658 ntTSL 5 BASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 AC163354.1-207ENSMUST00000221270 1243 ntTSL 5 BASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Dppa3-201ENSMUST00000049644 833 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Olfr504-201ENSMUST00000075595 958 ntAPPRIS P1 BASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Mup21-201ENSMUST00000077719 677 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Eif1-ps1-201ENSMUST00000086606 330 ntBASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Gm10704-201ENSMUST00000098952 730 ntBASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Olfr993-201ENSMUST00000099926 945 ntAPPRIS P1 BASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Cdh7-201ENSMUST00000027542 3390 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Akr1c14-201ENSMUST00000041768 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
Ccdc88bQ4QRL3 Gm42520-201ENSMUST00000199642 1502 ntBASIC6.58□□□□□ -1.36
Retrieved 100 of 76,532 protein–RNA pairs in 92.5 ms