Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 AC134333.1-201ENSMUST00000204536 944 ntBASIC6.2□□□□□ -1.42
RaraP11416 Gm2676-201ENSMUST00000207279 606 ntBASIC6.2□□□□□ -1.42
RaraP11416 Cx3cl1-205ENSMUST00000211947 377 ntTSL 5 BASIC6.2□□□□□ -1.42
RaraP11416 Mmp12-202ENSMUST00000065079 1185 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
RaraP11416 4930522H14Rik-201ENSMUST00000082306 849 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
RaraP11416 Ccl8-201ENSMUST00000009329 511 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
RaraP11416 Vmn1r203-202ENSMUST00000227520 8227 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
RaraP11416 Gm13544-201ENSMUST00000131189 2940 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
RaraP11416 Lama2-207ENSMUST00000189575 4244 ntTSL 5 BASIC6.2□□□□□ -1.42
RaraP11416 Gm12794-201ENSMUST00000052027 1452 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
RaraP11416 Fbxw15-201ENSMUST00000056745 1495 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
RaraP11416 AC152944.1-201ENSMUST00000220160 3101 ntBASIC6.2□□□□□ -1.42
RaraP11416 Dock7-205ENSMUST00000127417 6796 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
RaraP11416 AC115760.1-201ENSMUST00000225160 1327 ntBASIC6.2□□□□□ -1.42
RaraP11416 Bbox1-201ENSMUST00000046233 4030 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
RaraP11416 Iqca-207ENSMUST00000212394 2574 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
RaraP11416 Pkn2-210ENSMUST00000174422 2904 ntTSL 5 BASIC6.19□□□□□ -1.42
RaraP11416 Olfr965-202ENSMUST00000213335 1700 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
RaraP11416 Rgs17-204ENSMUST00000131996 8107 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
RaraP11416 Zfp638-220ENSMUST00000204751 9033 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
RaraP11416 Slc19a3-203ENSMUST00000164473 1550 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
RaraP11416 Vmn1r31-205ENSMUST00000228586 2115 ntAPPRIS P2 BASIC6.19□□□□□ -1.42
RaraP11416 Impact-201ENSMUST00000025290 3432 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
RaraP11416 Vmn1r6-202ENSMUST00000226689 8453 ntAPPRIS P2 BASIC6.19□□□□□ -1.42
RaraP11416 Olfr1146-ps1-201ENSMUST00000117180 943 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm15333-201ENSMUST00000118825 364 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm16216-201ENSMUST00000118970 1111 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm12850-201ENSMUST00000119210 436 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm11625-201ENSMUST00000119535 296 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm23118-201ENSMUST00000122657 187 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm25292-201ENSMUST00000122797 322 ntBASIC6.19□□□□□ -1.42
RaraP11416 Smyd1-204ENSMUST00000129630 376 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RaraP11416 Gm11234-201ENSMUST00000141030 845 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RaraP11416 Gm25342-201ENSMUST00000157459 122 ntBASIC6.19□□□□□ -1.42
RaraP11416 Scarna10-201ENSMUST00000158992 325 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm20468-201ENSMUST00000172664 452 ntTSL 3 BASIC6.19□□□□□ -1.42
RaraP11416 Mirt2-201ENSMUST00000175179 285 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm27512-201ENSMUST00000175328 126 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm23648-201ENSMUST00000180301 107 ntBASIC6.19□□□□□ -1.42
RaraP11416 Mir7020-201ENSMUST00000183787 70 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm28188-201ENSMUST00000190483 236 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm37658-201ENSMUST00000192672 315 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm38234-201ENSMUST00000195204 421 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm45081-201ENSMUST00000206281 572 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm44794-201ENSMUST00000206550 411 ntBASIC6.19□□□□□ -1.42
RaraP11416 Nbdy-205ENSMUST00000208235 132 ntAPPRIS P2 TSL 2 BASIC6.19□□□□□ -1.42
RaraP11416 AC137127.3-201ENSMUST00000213340 349 ntBASIC6.19□□□□□ -1.42
RaraP11416 AC162387.1-201ENSMUST00000213369 213 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm18703-201ENSMUST00000215318 333 ntBASIC6.19□□□□□ -1.42
RaraP11416 AC124826.1-201ENSMUST00000221651 325 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm36501-201ENSMUST00000221857 745 ntBASIC6.19□□□□□ -1.42
RaraP11416 AC123061.2-201ENSMUST00000226234 802 ntBASIC6.19□□□□□ -1.42
RaraP11416 Ing3-201ENSMUST00000031680 3800 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
RaraP11416 Olfr853-201ENSMUST00000058296 918 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
RaraP11416 Fxyd3-201ENSMUST00000072331 439 ntTSL 2 BASIC6.19□□□□□ -1.42
RaraP11416 Olfr825-201ENSMUST00000076814 1159 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
RaraP11416 Gm26056-201ENSMUST00000083043 104 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm23506-201ENSMUST00000083077 107 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm23851-201ENSMUST00000083831 103 ntBASIC6.19□□□□□ -1.42
RaraP11416 Gm3867-201ENSMUST00000086108 279 ntBASIC6.19□□□□□ -1.42
RaraP11416 A330076H08Rik-202ENSMUST00000207694 1836 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RaraP11416 mt-Nd5-201ENSMUST00000082418 1824 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
RaraP11416 Naip5-201ENSMUST00000049789 5204 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
RaraP11416 Olfr281-202ENSMUST00000217517 4535 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
RaraP11416 AC159326.1-201ENSMUST00000219989 1302 ntBASIC6.19□□□□□ -1.42
RaraP11416 Zfp148-ps1-201ENSMUST00000211201 2453 ntBASIC6.19□□□□□ -1.42
RaraP11416 Vmn1r201-202ENSMUST00000226330 4770 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
RaraP11416 Gm19035-201ENSMUST00000193299 1742 ntBASIC6.19□□□□□ -1.42
RaraP11416 Olfr110-202ENSMUST00000216472 1721 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
RaraP11416 A230107N01Rik-201ENSMUST00000180894 2348 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RaraP11416 Cntn3-202ENSMUST00000203619 5294 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
RaraP11416 Olfr633-202ENSMUST00000216006 3915 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
RaraP11416 Naip6-201ENSMUST00000042220 6705 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
RaraP11416 March1-205ENSMUST00000110255 4177 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
RaraP11416 Gm43611-201ENSMUST00000196656 4352 ntBASIC6.18□□□□□ -1.42
RaraP11416 E330014E10Rik-201ENSMUST00000071182 2476 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
RaraP11416 Sox6-204ENSMUST00000166877 8079 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
RaraP11416 Ugt1a7c-202ENSMUST00000113135 3302 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
RaraP11416 Gm44675-201ENSMUST00000208188 2927 ntBASIC6.18□□□□□ -1.42
RaraP11416 Gm18432-201ENSMUST00000195568 1451 ntBASIC6.18□□□□□ -1.42
RaraP11416 Gm44829-201ENSMUST00000208008 3193 ntBASIC6.18□□□□□ -1.42
RaraP11416 Tex38-201ENSMUST00000106521 802 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
RaraP11416 Gm10972-201ENSMUST00000107276 81 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
RaraP11416 Prdx2-rs3-201ENSMUST00000117259 594 ntBASIC6.18□□□□□ -1.42
RaraP11416 Gm13890-201ENSMUST00000117578 390 ntBASIC6.18□□□□□ -1.42
RaraP11416 Rps12-ps16-201ENSMUST00000118529 399 ntBASIC6.18□□□□□ -1.42
RaraP11416 Gm13866-201ENSMUST00000118901 968 ntBASIC6.18□□□□□ -1.42
RaraP11416 Gm15660-201ENSMUST00000118997 478 ntBASIC6.18□□□□□ -1.42
RaraP11416 Gm13430-201ENSMUST00000121366 288 ntBASIC6.18□□□□□ -1.42
RaraP11416 Gm14732-201ENSMUST00000121372 545 ntBASIC6.18□□□□□ -1.42
RaraP11416 Rps19-ps14-201ENSMUST00000121832 269 ntBASIC6.18□□□□□ -1.42
RaraP11416 Gm12631-201ENSMUST00000130576 637 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
RaraP11416 Gm11731-201ENSMUST00000139704 670 ntTSL 3 BASIC6.18□□□□□ -1.42
RaraP11416 Gm6058-201ENSMUST00000154261 399 ntBASIC6.18□□□□□ -1.42
RaraP11416 Gm23332-201ENSMUST00000157424 275 ntBASIC6.18□□□□□ -1.42
RaraP11416 Gm23050-201ENSMUST00000158775 165 ntBASIC6.18□□□□□ -1.42
RaraP11416 Gm17421-201ENSMUST00000167845 674 ntBASIC6.18□□□□□ -1.42
RaraP11416 Clec5a-204ENSMUST00000177178 665 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
RaraP11416 Gm21917-201ENSMUST00000177831 666 ntTSL 2 BASIC6.18□□□□□ -1.42
RaraP11416 Vmn2r-ps18-201ENSMUST00000177972 380 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 76,532 protein–RNA pairs in 71.3 ms