Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Scn11aQ9R053 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Scn11aQ9R053 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Scn11aQ9R053 Gm7213-201ENSMUST00000215977 950 ntBASIC20.86■□□□□ 0.93
Scn11aQ9R053 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Scn11aQ9R053 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Scn11aQ9R053 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Scn11aQ9R053 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Scn11aQ9R053 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Scn11aQ9R053 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Gm9013-201ENSMUST00000132939 882 ntBASIC20.85■□□□□ 0.93
Scn11aQ9R053 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn11aQ9R053 Gm5587-201ENSMUST00000206270 674 ntBASIC20.85■□□□□ 0.93
Scn11aQ9R053 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Scn11aQ9R053 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Scn11aQ9R053 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Scn11aQ9R053 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Scn11aQ9R053 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Scn11aQ9R053 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Scn11aQ9R053 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Scn11aQ9R053 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Scn11aQ9R053 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Scn11aQ9R053 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Scn11aQ9R053 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Scn11aQ9R053 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Scn11aQ9R053 Actl10-202ENSMUST00000226583 1501 ntBASIC20.83■□□□□ 0.93
Scn11aQ9R053 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Scn11aQ9R053 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Scn11aQ9R053 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Scn11aQ9R053 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC20.83■□□□□ 0.92
Scn11aQ9R053 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Scn11aQ9R053 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC20.83■□□□□ 0.92
Scn11aQ9R053 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Scn11aQ9R053 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Scn11aQ9R053 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Scn11aQ9R053 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
Scn11aQ9R053 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC20.82■□□□□ 0.92
Scn11aQ9R053 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC20.82■□□□□ 0.92
Scn11aQ9R053 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Scn11aQ9R053 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Scn11aQ9R053 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Scn11aQ9R053 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
Scn11aQ9R053 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC20.82■□□□□ 0.92
Scn11aQ9R053 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC20.82■□□□□ 0.92
Scn11aQ9R053 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Scn11aQ9R053 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Scn11aQ9R053 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Scn11aQ9R053 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Scn11aQ9R053 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC20.81■□□□□ 0.92
Scn11aQ9R053 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Scn11aQ9R053 Mzt1-203ENSMUST00000227948 952 ntBASIC20.81■□□□□ 0.92
Scn11aQ9R053 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Scn11aQ9R053 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Scn11aQ9R053 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
Scn11aQ9R053 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn11aQ9R053 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn11aQ9R053 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC20.8■□□□□ 0.92
Scn11aQ9R053 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn11aQ9R053 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn11aQ9R053 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn11aQ9R053 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn11aQ9R053 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn11aQ9R053 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Scn11aQ9R053 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC20.8■□□□□ 0.92
Scn11aQ9R053 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Scn11aQ9R053 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Scn11aQ9R053 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Scn11aQ9R053 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Scn11aQ9R053 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC20.79■□□□□ 0.92
Scn11aQ9R053 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Scn11aQ9R053 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Scn11aQ9R053 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Scn11aQ9R053 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn11aQ9R053 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Scn11aQ9R053 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn11aQ9R053 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC20.78■□□□□ 0.92
Scn11aQ9R053 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
Scn11aQ9R053 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn11aQ9R053 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Scn11aQ9R053 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 12.4 ms