Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
Cpsf3Q9QXK7 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf3Q9QXK7 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Cpsf3Q9QXK7 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf3Q9QXK7 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf3Q9QXK7 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf3Q9QXK7 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf3Q9QXK7 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf3Q9QXK7 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf3Q9QXK7 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf3Q9QXK7 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf3Q9QXK7 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf3Q9QXK7 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf3Q9QXK7 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Gm3375-201ENSMUST00000203929 796 ntBASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf3Q9QXK7 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Mir8112-201ENSMUST00000184382 131 ntBASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.87■□□□□ 0.61
Cpsf3Q9QXK7 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Cpsf3Q9QXK7 Gm12085-201ENSMUST00000119263 940 ntBASIC18.86■□□□□ 0.61
Cpsf3Q9QXK7 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Cpsf3Q9QXK7 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cpsf3Q9QXK7 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cpsf3Q9QXK7 Gm5417-201ENSMUST00000079706 384 ntBASIC18.86■□□□□ 0.61
Cpsf3Q9QXK7 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cpsf3Q9QXK7 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cpsf3Q9QXK7 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cpsf3Q9QXK7 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cpsf3Q9QXK7 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Cpsf3Q9QXK7 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cpsf3Q9QXK7 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Cpsf3Q9QXK7 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.85■□□□□ 0.61
Cpsf3Q9QXK7 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Cpsf3Q9QXK7 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC18.85■□□□□ 0.61
Cpsf3Q9QXK7 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cpsf3Q9QXK7 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Cpsf3Q9QXK7 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cpsf3Q9QXK7 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cpsf3Q9QXK7 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cpsf3Q9QXK7 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cpsf3Q9QXK7 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cpsf3Q9QXK7 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cpsf3Q9QXK7 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC18.83■□□□□ 0.61
Cpsf3Q9QXK7 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Cpsf3Q9QXK7 Gm24841-201ENSMUST00000158676 357 ntBASIC18.83■□□□□ 0.6
Cpsf3Q9QXK7 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Cpsf3Q9QXK7 Gm20472-201ENSMUST00000174403 1240 ntBASIC18.83■□□□□ 0.6
Cpsf3Q9QXK7 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC18.83■□□□□ 0.6
Cpsf3Q9QXK7 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC18.83■□□□□ 0.6
Cpsf3Q9QXK7 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms