Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
ShhQ62226 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ShhQ62226 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ShhQ62226 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
ShhQ62226 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ShhQ62226 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ShhQ62226 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC16.32■□□□□ 0.2
ShhQ62226 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ShhQ62226 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC16.32■□□□□ 0.2
ShhQ62226 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ShhQ62226 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ShhQ62226 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ShhQ62226 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
ShhQ62226 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC16.32■□□□□ 0.2
ShhQ62226 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ShhQ62226 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC16.32■□□□□ 0.2
ShhQ62226 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
ShhQ62226 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
ShhQ62226 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
ShhQ62226 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
ShhQ62226 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC16.31■□□□□ 0.2
ShhQ62226 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC16.31■□□□□ 0.2
ShhQ62226 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC16.31■□□□□ 0.2
ShhQ62226 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC16.31■□□□□ 0.2
ShhQ62226 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.31■□□□□ 0.2
ShhQ62226 Arhgef4-208ENSMUST00000211073 171 ntBASIC16.31■□□□□ 0.2
ShhQ62226 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
ShhQ62226 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC16.31■□□□□ 0.2
ShhQ62226 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ShhQ62226 Gm38345-201ENSMUST00000192635 1748 ntBASIC16.31■□□□□ 0.2
ShhQ62226 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
ShhQ62226 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ShhQ62226 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
ShhQ62226 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ShhQ62226 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC16.3■□□□□ 0.2
ShhQ62226 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ShhQ62226 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ShhQ62226 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
ShhQ62226 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ShhQ62226 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ShhQ62226 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ShhQ62226 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
ShhQ62226 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ShhQ62226 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ShhQ62226 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC16.29■□□□□ 0.2
ShhQ62226 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Gm13559-201ENSMUST00000120476 863 ntBASIC16.29■□□□□ 0.2
ShhQ62226 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC16.29■□□□□ 0.2
ShhQ62226 Gm21814-202ENSMUST00000203277 873 ntBASIC16.29■□□□□ 0.2
ShhQ62226 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC16.29■□□□□ 0.2
ShhQ62226 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
ShhQ62226 AC140264.2-202ENSMUST00000218746 817 ntBASIC16.29■□□□□ 0.2
ShhQ62226 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Gm10461-201ENSMUST00000202073 4786 ntBASIC16.29■□□□□ 0.2
ShhQ62226 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC16.29■□□□□ 0.2
ShhQ62226 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
ShhQ62226 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ShhQ62226 Flg-201ENSMUST00000050758 1488 ntBASIC16.29■□□□□ 0.2
ShhQ62226 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ShhQ62226 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
ShhQ62226 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ShhQ62226 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ShhQ62226 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ShhQ62226 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ShhQ62226 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ShhQ62226 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
ShhQ62226 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ShhQ62226 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms