Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Shmt1P50431 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Shmt1P50431 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
Shmt1P50431 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Shmt1P50431 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC18.56■□□□□ 0.56
Shmt1P50431 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Shmt1P50431 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Shmt1P50431 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Shmt1P50431 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Shmt1P50431 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Shmt1P50431 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Shmt1P50431 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC18.55■□□□□ 0.56
Shmt1P50431 Gm37194-201ENSMUST00000193092 3031 ntBASIC18.55■□□□□ 0.56
Shmt1P50431 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Shmt1P50431 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Shmt1P50431 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Shmt1P50431 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Shmt1P50431 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Shmt1P50431 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
Shmt1P50431 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Shmt1P50431 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Shmt1P50431 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Shmt1P50431 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Shmt1P50431 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC18.54■□□□□ 0.56
Shmt1P50431 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Shmt1P50431 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Shmt1P50431 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Shmt1P50431 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Shmt1P50431 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.54■□□□□ 0.56
Shmt1P50431 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Shmt1P50431 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Shmt1P50431 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Shmt1P50431 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Shmt1P50431 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Shmt1P50431 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC18.53■□□□□ 0.56
Shmt1P50431 Mir8112-201ENSMUST00000184382 131 ntBASIC18.53■□□□□ 0.56
Shmt1P50431 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.53■□□□□ 0.56
Shmt1P50431 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC18.53■□□□□ 0.56
Shmt1P50431 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Shmt1P50431 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Shmt1P50431 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Shmt1P50431 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
Shmt1P50431 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Shmt1P50431 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Shmt1P50431 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Shmt1P50431 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Shmt1P50431 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Shmt1P50431 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Shmt1P50431 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Shmt1P50431 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC18.52■□□□□ 0.56
Shmt1P50431 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Shmt1P50431 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Shmt1P50431 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Shmt1P50431 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.52■□□□□ 0.56
Shmt1P50431 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
Shmt1P50431 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC18.52■□□□□ 0.56
Shmt1P50431 Gm24841-201ENSMUST00000158676 357 ntBASIC18.52■□□□□ 0.56
Shmt1P50431 Gm38027-201ENSMUST00000192315 235 ntBASIC18.52■□□□□ 0.56
Shmt1P50431 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Shmt1P50431 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Shmt1P50431 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.52■□□□□ 0.56
Shmt1P50431 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Shmt1P50431 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Shmt1P50431 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Shmt1P50431 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
Shmt1P50431 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Shmt1P50431 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Shmt1P50431 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Shmt1P50431 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.51■□□□□ 0.55
Shmt1P50431 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Shmt1P50431 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Shmt1P50431 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Shmt1P50431 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.51■□□□□ 0.55
Shmt1P50431 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC18.51■□□□□ 0.55
Shmt1P50431 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Shmt1P50431 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC18.51■□□□□ 0.55
Shmt1P50431 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Shmt1P50431 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Shmt1P50431 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.5■□□□□ 0.55
Shmt1P50431 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Shmt1P50431 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Shmt1P50431 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.5■□□□□ 0.55
Shmt1P50431 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.5■□□□□ 0.55
Shmt1P50431 Gm30025-201ENSMUST00000218555 728 ntBASIC18.5■□□□□ 0.55
Shmt1P50431 Gm9987-201ENSMUST00000069768 567 ntBASIC18.5■□□□□ 0.55
Shmt1P50431 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms