Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Msh3P13705 Gm27011-201ENSMUST00000182352 972 ntBASIC19.28■□□□□ 0.68
Msh3P13705 Gm8520-201ENSMUST00000186517 868 ntBASIC19.28■□□□□ 0.68
Msh3P13705 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC19.28■□□□□ 0.68
Msh3P13705 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Msh3P13705 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Msh3P13705 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Msh3P13705 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Msh3P13705 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Msh3P13705 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC19.27■□□□□ 0.68
Msh3P13705 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC19.27■□□□□ 0.68
Msh3P13705 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Msh3P13705 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.27■□□□□ 0.68
Msh3P13705 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Msh3P13705 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Msh3P13705 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Msh3P13705 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Msh3P13705 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Msh3P13705 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Msh3P13705 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Msh3P13705 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Msh3P13705 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Msh3P13705 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Msh3P13705 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Msh3P13705 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC19.25■□□□□ 0.67
Msh3P13705 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC19.25■□□□□ 0.67
Msh3P13705 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Msh3P13705 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Msh3P13705 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Msh3P13705 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC19.25■□□□□ 0.67
Msh3P13705 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Msh3P13705 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC19.24■□□□□ 0.67
Msh3P13705 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC19.24■□□□□ 0.67
Msh3P13705 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC19.24■□□□□ 0.67
Msh3P13705 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.24■□□□□ 0.67
Msh3P13705 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Msh3P13705 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Msh3P13705 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msh3P13705 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Msh3P13705 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Msh3P13705 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Msh3P13705 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Msh3P13705 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC19.23■□□□□ 0.67
Msh3P13705 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Msh3P13705 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Msh3P13705 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Msh3P13705 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Msh3P13705 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Msh3P13705 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Msh3P13705 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msh3P13705 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Msh3P13705 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC19.22■□□□□ 0.67
Msh3P13705 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msh3P13705 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msh3P13705 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Msh3P13705 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.22■□□□□ 0.67
Msh3P13705 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Msh3P13705 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msh3P13705 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msh3P13705 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms