Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC21■□□□□ 0.95
Col3a1P08121 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC21■□□□□ 0.95
Col3a1P08121 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col3a1P08121 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col3a1P08121 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC20.99■□□□□ 0.95
Col3a1P08121 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col3a1P08121 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col3a1P08121 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col3a1P08121 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col3a1P08121 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC20.99■□□□□ 0.95
Col3a1P08121 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC20.99■□□□□ 0.95
Col3a1P08121 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col3a1P08121 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col3a1P08121 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col3a1P08121 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col3a1P08121 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.99■□□□□ 0.95
Col3a1P08121 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC20.99■□□□□ 0.95
Col3a1P08121 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col3a1P08121 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col3a1P08121 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col3a1P08121 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col3a1P08121 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC20.98■□□□□ 0.95
Col3a1P08121 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col3a1P08121 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Col3a1P08121 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Col3a1P08121 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col3a1P08121 Grk6-206ENSMUST00000224995 2971 ntBASIC20.98■□□□□ 0.95
Col3a1P08121 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col3a1P08121 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Col3a1P08121 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col3a1P08121 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col3a1P08121 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col3a1P08121 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col3a1P08121 Gm5587-201ENSMUST00000206270 674 ntBASIC20.97■□□□□ 0.95
Col3a1P08121 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Col3a1P08121 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col3a1P08121 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Col3a1P08121 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.97■□□□□ 0.95
Col3a1P08121 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col3a1P08121 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col3a1P08121 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col3a1P08121 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col3a1P08121 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col3a1P08121 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col3a1P08121 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col3a1P08121 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Col3a1P08121 Gm9013-201ENSMUST00000132939 882 ntBASIC20.96■□□□□ 0.95
Col3a1P08121 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col3a1P08121 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col3a1P08121 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC20.96■□□□□ 0.95
Col3a1P08121 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col3a1P08121 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col3a1P08121 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col3a1P08121 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Col3a1P08121 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col3a1P08121 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col3a1P08121 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Col3a1P08121 Actl10-202ENSMUST00000226583 1501 ntBASIC20.95■□□□□ 0.94
Col3a1P08121 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col3a1P08121 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Col3a1P08121 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
Col3a1P08121 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC20.94■□□□□ 0.94
Col3a1P08121 Gm27389-201ENSMUST00000183622 195 ntBASIC20.94■□□□□ 0.94
Col3a1P08121 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC20.94■□□□□ 0.94
Col3a1P08121 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col3a1P08121 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col3a1P08121 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col3a1P08121 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col3a1P08121 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col3a1P08121 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col3a1P08121 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC20.94■□□□□ 0.94
Col3a1P08121 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.94■□□□□ 0.94
Col3a1P08121 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col3a1P08121 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.94■□□□□ 0.94
Col3a1P08121 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col3a1P08121 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col3a1P08121 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC20.94■□□□□ 0.94
Col3a1P08121 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC20.94■□□□□ 0.94
Col3a1P08121 Gm3272-201ENSMUST00000181181 1229 ntBASIC20.94■□□□□ 0.94
Col3a1P08121 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col3a1P08121 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col3a1P08121 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Col3a1P08121 Gm10566-201ENSMUST00000086739 996 ntBASIC20.94■□□□□ 0.94
Col3a1P08121 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col3a1P08121 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col3a1P08121 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col3a1P08121 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col3a1P08121 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col3a1P08121 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col3a1P08121 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col3a1P08121 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col3a1P08121 Gm8258-201ENSMUST00000055593 1449 ntBASIC20.93■□□□□ 0.94
Col3a1P08121 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col3a1P08121 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col3a1P08121 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col3a1P08121 Gm25016-201ENSMUST00000158399 131 ntBASIC20.93■□□□□ 0.94
Col3a1P08121 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col3a1P08121 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC20.93■□□□□ 0.94
Col3a1P08121 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Col3a1P08121 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms