Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cops4O88544 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cops4O88544 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC16.22■□□□□ 0.19
Cops4O88544 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cops4O88544 Idnk-204ENSMUST00000226010 1898 ntBASIC16.22■□□□□ 0.19
Cops4O88544 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cops4O88544 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Cops4O88544 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Cops4O88544 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cops4O88544 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC16.21■□□□□ 0.19
Cops4O88544 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cops4O88544 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cops4O88544 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cops4O88544 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cops4O88544 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cops4O88544 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cops4O88544 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cops4O88544 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Cops4O88544 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Cops4O88544 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Cops4O88544 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC16.21■□□□□ 0.19
Cops4O88544 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC16.21■□□□□ 0.19
Cops4O88544 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cops4O88544 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
Cops4O88544 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Cops4O88544 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Cops4O88544 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cops4O88544 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cops4O88544 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Cops4O88544 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cops4O88544 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Cops4O88544 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Cops4O88544 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC16.2■□□□□ 0.18
Cops4O88544 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cops4O88544 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cops4O88544 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cops4O88544 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Cops4O88544 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cops4O88544 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC16.19■□□□□ 0.18
Cops4O88544 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cops4O88544 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cops4O88544 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cops4O88544 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cops4O88544 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Cops4O88544 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cops4O88544 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC16.19■□□□□ 0.18
Cops4O88544 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC16.19■□□□□ 0.18
Cops4O88544 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cops4O88544 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC16.19■□□□□ 0.18
Cops4O88544 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cops4O88544 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cops4O88544 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Cops4O88544 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cops4O88544 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cops4O88544 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cops4O88544 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cops4O88544 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC16.19■□□□□ 0.18
Cops4O88544 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Cops4O88544 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cops4O88544 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Cops4O88544 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cops4O88544 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Cops4O88544 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cops4O88544 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cops4O88544 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cops4O88544 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Cops4O88544 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Cops4O88544 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cops4O88544 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC16.18■□□□□ 0.18
Cops4O88544 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cops4O88544 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cops4O88544 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cops4O88544 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cops4O88544 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC16.18■□□□□ 0.18
Cops4O88544 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cops4O88544 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cops4O88544 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Cops4O88544 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cops4O88544 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cops4O88544 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC16.17■□□□□ 0.18
Cops4O88544 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cops4O88544 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cops4O88544 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cops4O88544 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Cops4O88544 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cops4O88544 Gm13146-201ENSMUST00000118508 780 ntBASIC16.17■□□□□ 0.18
Cops4O88544 Gm13234-201ENSMUST00000120010 747 ntBASIC16.17■□□□□ 0.18
Cops4O88544 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC16.17■□□□□ 0.18
Cops4O88544 Gm42778-201ENSMUST00000199644 553 ntBASIC16.17■□□□□ 0.18
Cops4O88544 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cops4O88544 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC16.17■□□□□ 0.18
Cops4O88544 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Cops4O88544 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cops4O88544 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cops4O88544 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cops4O88544 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cops4O88544 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Cops4O88544 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC16.17■□□□□ 0.18
Cops4O88544 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cops4O88544 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms