Protein–RNA interactions for Protein: O54788

Dffb, DNA fragmentation factor subunit beta, mousemouse

Known RBP Predictions only

Length 344 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DffbO54788 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
DffbO54788 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ -0
DffbO54788 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
DffbO54788 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC15.05■□□□□ -0
DffbO54788 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
DffbO54788 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
DffbO54788 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DffbO54788 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC15.04■□□□□ -0
DffbO54788 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DffbO54788 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DffbO54788 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DffbO54788 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC15.04■□□□□ -0
DffbO54788 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DffbO54788 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DffbO54788 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC15.04■□□□□ -0
DffbO54788 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC15.04■□□□□ -0
DffbO54788 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
DffbO54788 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC15.04■□□□□ -0
DffbO54788 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DffbO54788 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DffbO54788 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
DffbO54788 Gm43808-201ENSMUST00000202534 2065 ntBASIC15.04■□□□□ -0
DffbO54788 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DffbO54788 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC15.03■□□□□ -0
DffbO54788 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC15.03■□□□□ -0
DffbO54788 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC15.03■□□□□ -0
DffbO54788 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DffbO54788 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
DffbO54788 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DffbO54788 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DffbO54788 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DffbO54788 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DffbO54788 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DffbO54788 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC15.02■□□□□ -0
DffbO54788 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC15.02■□□□□ -0
DffbO54788 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DffbO54788 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DffbO54788 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC15.02■□□□□ -0
DffbO54788 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC15.02■□□□□ -0
DffbO54788 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC15.02■□□□□ -0
DffbO54788 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DffbO54788 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
DffbO54788 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
DffbO54788 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
DffbO54788 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC15.02□□□□□ -0.01
DffbO54788 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
DffbO54788 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
DffbO54788 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
DffbO54788 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
DffbO54788 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
DffbO54788 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
DffbO54788 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC15.01□□□□□ -0.01
DffbO54788 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC15.01□□□□□ -0.01
DffbO54788 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
DffbO54788 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC15.01□□□□□ -0.01
DffbO54788 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
DffbO54788 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
DffbO54788 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
DffbO54788 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
DffbO54788 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
DffbO54788 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC15□□□□□ -0.01
DffbO54788 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
DffbO54788 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
DffbO54788 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
DffbO54788 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
DffbO54788 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
DffbO54788 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms