Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Gm43338-201ENSMUST00000198617 2223 ntBASIC16.69■□□□□ 0.26
Clk3O35492 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clk3O35492 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clk3O35492 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Clk3O35492 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Clk3O35492 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clk3O35492 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clk3O35492 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clk3O35492 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Clk3O35492 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Clk3O35492 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clk3O35492 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clk3O35492 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Clk3O35492 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clk3O35492 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
Clk3O35492 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Gm13148-201ENSMUST00000118892 745 ntBASIC16.68■□□□□ 0.26
Clk3O35492 Rab3c-203ENSMUST00000224180 967 ntBASIC16.68■□□□□ 0.26
Clk3O35492 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Clk3O35492 Gm45412-201ENSMUST00000210217 2275 ntBASIC16.68■□□□□ 0.26
Clk3O35492 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Clk3O35492 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Clk3O35492 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clk3O35492 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC16.67■□□□□ 0.26
Clk3O35492 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Clk3O35492 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC16.67■□□□□ 0.26
Clk3O35492 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC16.67■□□□□ 0.26
Clk3O35492 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC16.67■□□□□ 0.26
Clk3O35492 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clk3O35492 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clk3O35492 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clk3O35492 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clk3O35492 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clk3O35492 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clk3O35492 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clk3O35492 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clk3O35492 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Clk3O35492 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clk3O35492 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clk3O35492 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Clk3O35492 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Clk3O35492 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Clk3O35492 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC16.65■□□□□ 0.26
Clk3O35492 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clk3O35492 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Clk3O35492 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Clk3O35492 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC16.65■□□□□ 0.26
Clk3O35492 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clk3O35492 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Clk3O35492 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC16.65■□□□□ 0.26
Clk3O35492 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC16.65■□□□□ 0.26
Clk3O35492 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clk3O35492 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clk3O35492 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Clk3O35492 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clk3O35492 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clk3O35492 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Clk3O35492 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clk3O35492 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC16.64■□□□□ 0.25
Clk3O35492 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clk3O35492 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clk3O35492 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
Clk3O35492 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC16.64■□□□□ 0.25
Clk3O35492 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clk3O35492 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clk3O35492 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Clk3O35492 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clk3O35492 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms