Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm27463-201ENSMUST00000183569 57 ntBASIC17.19■□□□□ 0.34
Chd3B1AR17 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC17.19■□□□□ 0.34
Chd3B1AR17 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chd3B1AR17 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chd3B1AR17 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chd3B1AR17 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
Chd3B1AR17 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC17.19■□□□□ 0.34
Chd3B1AR17 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC17.19■□□□□ 0.34
Chd3B1AR17 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Chd3B1AR17 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chd3B1AR17 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Chd3B1AR17 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Chd3B1AR17 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chd3B1AR17 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Chd3B1AR17 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Chd3B1AR17 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chd3B1AR17 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Chd3B1AR17 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Chd3B1AR17 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Chd3B1AR17 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Chd3B1AR17 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Chd3B1AR17 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Chd3B1AR17 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Chd3B1AR17 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC17.18■□□□□ 0.34
Chd3B1AR17 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Chd3B1AR17 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Chd3B1AR17 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Chd3B1AR17 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Chd3B1AR17 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Chd3B1AR17 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Chd3B1AR17 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Chd3B1AR17 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Chd3B1AR17 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC17.17■□□□□ 0.34
Chd3B1AR17 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Chd3B1AR17 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC17.17■□□□□ 0.34
Chd3B1AR17 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Chd3B1AR17 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Chd3B1AR17 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Chd3B1AR17 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Chd3B1AR17 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC17.17■□□□□ 0.34
Chd3B1AR17 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC17.17■□□□□ 0.34
Chd3B1AR17 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Chd3B1AR17 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Chd3B1AR17 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Chd3B1AR17 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Chd3B1AR17 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Chd3B1AR17 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Chd3B1AR17 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC17.16■□□□□ 0.34
Chd3B1AR17 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Chd3B1AR17 Gm45058-201ENSMUST00000205810 766 ntBASIC17.16■□□□□ 0.34
Chd3B1AR17 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd3B1AR17 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd3B1AR17 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC17.15■□□□□ 0.34
Chd3B1AR17 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd3B1AR17 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd3B1AR17 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Chd3B1AR17 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd3B1AR17 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd3B1AR17 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Chd3B1AR17 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Chd3B1AR17 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd3B1AR17 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd3B1AR17 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd3B1AR17 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Chd3B1AR17 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
Chd3B1AR17 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd3B1AR17 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd3B1AR17 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd3B1AR17 Dmtn-207ENSMUST00000228001 2437 ntBASIC17.15■□□□□ 0.34
Chd3B1AR17 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Chd3B1AR17 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Chd3B1AR17 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chd3B1AR17 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chd3B1AR17 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chd3B1AR17 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chd3B1AR17 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC17.14■□□□□ 0.33
Chd3B1AR17 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chd3B1AR17 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Chd3B1AR17 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chd3B1AR17 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chd3B1AR17 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC17.14■□□□□ 0.33
Chd3B1AR17 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms