Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Slamf7-202ENSMUST00000192024 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Kif2a-204ENSMUST00000122233 3533 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm37930-201ENSMUST00000194308 1886 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm36888-201ENSMUST00000195819 2945 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 2700089I24Rik-201ENSMUST00000190204 1827 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Olfr720-202ENSMUST00000206298 4437 ntAPPRIS P1 TSL 3 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Igkv14-126-201ENSMUST00000103310 358 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm25276-201ENSMUST00000104300 124 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Swi5-204ENSMUST00000113400 522 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm11976-201ENSMUST00000119236 295 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Mrpl48-ps-201ENSMUST00000121413 636 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm14559-201ENSMUST00000121745 496 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm14271-201ENSMUST00000137886 630 ntTSL 3 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm13427-201ENSMUST00000154296 794 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm25333-201ENSMUST00000158035 246 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Vmn1r-ps68-201ENSMUST00000174638 399 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm26197-201ENSMUST00000175033 115 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Mir5128-201ENSMUST00000175217 84 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Mir7058-201ENSMUST00000184637 75 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Mir6363-201ENSMUST00000184880 114 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Scgb2b18-201ENSMUST00000186529 523 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Ly6a-203ENSMUST00000187171 853 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 1810041H14Rik-203ENSMUST00000187773 416 ntTSL 5 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm29345-201ENSMUST00000189213 399 ntTSL 3 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Txndc9-203ENSMUST00000192960 472 ntTSL 3 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 2610034O05Rik-201ENSMUST00000194078 855 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm38363-202ENSMUST00000195029 622 ntTSL 5 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 S100a6-203ENSMUST00000198128 464 ntAPPRIS P1 TSL 3 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm44812-202ENSMUST00000208999 1285 ntTSL 5 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm4032-201ENSMUST00000210886 487 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm45370-201ENSMUST00000211274 483 ntTSL 5 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 AC153568.1-201ENSMUST00000218165 341 ntTSL 2 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 AC135019.1-201ENSMUST00000219949 307 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm21937-201ENSMUST00000222825 218 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm25202-201ENSMUST00000082838 191 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm25792-201ENSMUST00000083289 100 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 n-R5s60-201ENSMUST00000083299 119 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Mir412-201ENSMUST00000083636 80 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm12845-201ENSMUST00000203629 1767 ntAPPRIS P5 TSL 5 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm38257-201ENSMUST00000195881 2761 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 A330008L17Rik-202ENSMUST00000153366 2614 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 9330178D15Rik-201ENSMUST00000196033 3451 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Vmn1r193-204ENSMUST00000228303 6653 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Cav1-201ENSMUST00000007799 2522 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Olfr1392-206ENSMUST00000215861 3670 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Olfr491-202ENSMUST00000209545 1944 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Vmn2r96-201ENSMUST00000165692 2343 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm43088-201ENSMUST00000197530 2347 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Vmn1r86-203ENSMUST00000227220 6445 ntAPPRIS P2 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm10603-202ENSMUST00000184420 4520 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm38277-201ENSMUST00000195172 1367 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Zfp442-201ENSMUST00000109916 2922 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Vwc2l-201ENSMUST00000053922 4655 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Prg4-208ENSMUST00000164600 4263 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm26079-201ENSMUST00000104066 133 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm13046-201ENSMUST00000117391 501 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Fyttd1-202ENSMUST00000120345 648 ntTSL 5 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Olfr404-ps1-201ENSMUST00000121065 972 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm25845-201ENSMUST00000122588 310 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm13569-201ENSMUST00000137221 574 ntTSL 3 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm15338-201ENSMUST00000151884 552 ntTSL 3 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 4930522O17Rik-201ENSMUST00000155178 447 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm17364-201ENSMUST00000163881 72 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm17677-201ENSMUST00000166746 351 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm20430-201ENSMUST00000172474 207 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Trav9n-3-201ENSMUST00000177705 575 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm24167-201ENSMUST00000177733 124 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Trav9d-3-201ENSMUST00000178252 575 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm24028-201ENSMUST00000178991 124 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Mir6238-201ENSMUST00000184140 129 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm42439-201ENSMUST00000195931 486 ntTSL 3 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 AC136146.1-201ENSMUST00000196180 91 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 4930447N08Rik-201ENSMUST00000196290 497 ntTSL 3 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Tprkb-208ENSMUST00000200680 814 ntAPPRIS P1 TSL 3 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm18100-201ENSMUST00000200897 452 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm7542-201ENSMUST00000201140 777 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Oaz3-207ENSMUST00000204913 689 ntTSL 5 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm19726-201ENSMUST00000205008 240 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm44811-201ENSMUST00000209120 228 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 CT010455.1-201ENSMUST00000218579 413 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 AC154224.1-201ENSMUST00000224367 403 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 CT025667.1-201ENSMUST00000225872 382 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm8256-203ENSMUST00000228692 591 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Rbp7-201ENSMUST00000030848 619 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Olfr1449-201ENSMUST00000056005 948 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Olfr502-201ENSMUST00000078933 1059 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm3512-201ENSMUST00000090663 441 ntTSL 5 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Olfr237-ps1-203ENSMUST00000216411 4115 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm37775-201ENSMUST00000194120 2313 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 P2ry12-203ENSMUST00000196583 2344 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Dcp2-201ENSMUST00000025350 8616 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm10220-201ENSMUST00000088236 2980 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Tnfaip3-202ENSMUST00000105527 4334 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Gm37789-201ENSMUST00000192862 2889 ntBASIC6.85□□□□□ -1.31
Rnf40Q3U319 Slc35a5-201ENSMUST00000023344 4233 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Ubr4-212ENSMUST00000165860 15798 ntTSL 5 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Ttc33-201ENSMUST00000022751 1832 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Rnf40Q3U319 AC154682.1-201ENSMUST00000225871 3124 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
Rnf40Q3U319 Foxp2-204ENSMUST00000115472 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
Rnf40Q3U319 AC022775.1-201ENSMUST00000228163 2698 ntBASIC6.84□□□□□ -1.31
Retrieved 100 of 76,532 protein–RNA pairs in 95.3 ms