Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Mgst2-206ENSMUST00000161590 481 ntTSL 3 BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Ear-ps4-201ENSMUST00000166834 450 ntBASIC6.88□□□□□ -1.31
Rnf40Q3U319 Mir1231-201ENSMUST00000175639 81 ntBASIC6.88□□□□□ -1.31
Rnf40Q3U319 Gm21834-201ENSMUST00000178907 453 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Rhox4a2-201ENSMUST00000179915 901 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
Rnf40Q3U319 4930535O05Rik-201ENSMUST00000184406 419 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Rnf40Q3U319 AV026068-203ENSMUST00000185946 668 ntTSL 3 BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Gm29289-201ENSMUST00000188358 576 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Gm18036-201ENSMUST00000195256 272 ntBASIC6.88□□□□□ -1.31
Rnf40Q3U319 Gm3511-201ENSMUST00000199823 204 ntBASIC6.88□□□□□ -1.31
Rnf40Q3U319 Gm19900-201ENSMUST00000207285 576 ntBASIC6.88□□□□□ -1.31
Rnf40Q3U319 Gm45678-201ENSMUST00000210509 295 ntBASIC6.88□□□□□ -1.31
Rnf40Q3U319 AC117656.1-201ENSMUST00000225826 339 ntBASIC6.88□□□□□ -1.31
Rnf40Q3U319 AC141884.1-201ENSMUST00000226327 636 ntBASIC6.88□□□□□ -1.31
Rnf40Q3U319 Olfr99-201ENSMUST00000077585 918 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Fmo9-201ENSMUST00000027843 3065 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Vcan-203ENSMUST00000109546 12427 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Ipo11-205ENSMUST00000186033 4147 ntTSL 5 BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Shoc2-202ENSMUST00000169861 4065 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Gm9048-201ENSMUST00000177744 2409 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Gm9040-201ENSMUST00000177762 2409 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Gm9044-201ENSMUST00000179851 2409 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Gm9046-201ENSMUST00000218329 2409 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Gm15448-202ENSMUST00000108619 2097 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Prom1-216ENSMUST00000197750 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Fanci-201ENSMUST00000036865 4645 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Anapc10-203ENSMUST00000210812 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
Rnf40Q3U319 4833413G10Rik-201ENSMUST00000199632 1946 ntBASIC6.88□□□□□ -1.31
Rnf40Q3U319 Cyld-206ENSMUST00000209559 4476 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
Rnf40Q3U319 Gm19113-201ENSMUST00000217552 1828 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Pdzph1-201ENSMUST00000025064 4174 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm26603-201ENSMUST00000181380 2861 ntTSL 5 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Rnf219-202ENSMUST00000227640 1632 ntAPPRIS ALT2 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Osbpl9-213ENSMUST00000160271 2604 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm11885-201ENSMUST00000118473 1428 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Osbpl9-216ENSMUST00000161363 2356 ntTSL 5 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Elavl2-209ENSMUST00000107124 4127 ntAPPRIS ALT1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm14895-201ENSMUST00000121858 1361 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm19125-201ENSMUST00000188408 1383 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Stk4-202ENSMUST00000088291 4098 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Vmn1r77-202ENSMUST00000226525 8252 ntAPPRIS ALT2 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm25760-201ENSMUST00000103989 132 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Ctps2-203ENSMUST00000112300 741 ntTSL 3 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm11970-201ENSMUST00000116105 320 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm26469-201ENSMUST00000116765 121 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Rpl10-ps4-201ENSMUST00000117120 286 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm7746-201ENSMUST00000120966 503 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Snrp1c-ps2-201ENSMUST00000120976 365 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm15538-201ENSMUST00000121410 313 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm15056-201ENSMUST00000122025 549 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm11646-201ENSMUST00000135857 397 ntTSL 3 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Rpl35a-ps5-201ENSMUST00000137013 333 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm11695-201ENSMUST00000144230 407 ntTSL 2 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm13663-202ENSMUST00000145563 643 ntTSL 5 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm13748-201ENSMUST00000149820 378 ntTSL 2 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm7953-201ENSMUST00000168278 469 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Rps8-ps1-201ENSMUST00000172445 624 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm24819-201ENSMUST00000175094 166 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm22307-201ENSMUST00000180019 107 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Sbp-206ENSMUST00000183155 882 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Mir6355-201ENSMUST00000183687 106 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm9451-201ENSMUST00000188491 604 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm43286-201ENSMUST00000197420 424 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm42959-201ENSMUST00000202184 212 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm44157-201ENSMUST00000204720 410 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm45032-201ENSMUST00000205375 520 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Olfr278-ps1-201ENSMUST00000205676 238 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Agr2-201ENSMUST00000020898 784 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm44992-209ENSMUST00000209680 1083 ntTSL 5 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm45730-201ENSMUST00000212560 395 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm32443-201ENSMUST00000217880 707 ntTSL 3 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Eif1-ps2-201ENSMUST00000221990 339 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm33312-201ENSMUST00000222443 332 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm7768-201ENSMUST00000222988 597 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 AC125484.1-201ENSMUST00000223218 234 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 AC133498.1-206ENSMUST00000223254 385 ntTSL 5 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm5528-201ENSMUST00000076314 480 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Mcf2-201ENSMUST00000033478 3659 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm42727-201ENSMUST00000202446 2823 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Olfr104-ps-201ENSMUST00000178766 1972 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Serpinb9g-201ENSMUST00000081927 1927 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Frem2-201ENSMUST00000091137 12348 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Gm13088-201ENSMUST00000105771 1819 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Vmn2r-ps115-201ENSMUST00000177393 1809 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Olfr1246-204ENSMUST00000217254 5411 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Itch-201ENSMUST00000029126 5159 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Rnf40Q3U319 4930422C21Rik-201ENSMUST00000212419 2362 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Pramef25-201ENSMUST00000105766 1684 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
Rnf40Q3U319 AC187103.2-201ENSMUST00000223605 1617 ntBASIC6.87□□□□□ -1.31
Rnf40Q3U319 Erc2-208ENSMUST00000210924 4871 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
Rnf40Q3U319 Rapgef6-204ENSMUST00000108894 3475 ntTSL 5 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Rab3c-201ENSMUST00000167824 8444 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm4994-201ENSMUST00000118379 2187 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm43469-201ENSMUST00000196084 4634 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gabrp-201ENSMUST00000020366 3280 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Gm45633-201ENSMUST00000210669 3253 ntBASIC6.86□□□□□ -1.31
Rnf40Q3U319 Add3-201ENSMUST00000025999 4334 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Mcmdc2-205ENSMUST00000171802 2553 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Mmp1b-201ENSMUST00000047888 1449 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
Rnf40Q3U319 Cdh6-201ENSMUST00000036439 8167 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
Retrieved 100 of 76,532 protein–RNA pairs in 77.9 ms