Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm7785-201ENSMUST00000117121 892 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm4853-201ENSMUST00000119359 394 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm11472-201ENSMUST00000121305 556 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm8761-201ENSMUST00000121507 955 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm26023-201ENSMUST00000122722 313 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm24139-201ENSMUST00000122780 288 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm16098-201ENSMUST00000141926 796 ntTSL 2 BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm13068-202ENSMUST00000146250 876 ntTSL 3 BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm12801-201ENSMUST00000153228 263 ntTSL 3 BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm23411-201ENSMUST00000157988 62 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm24057-201ENSMUST00000158616 302 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm24228-201ENSMUST00000158829 129 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gml-202ENSMUST00000164026 895 ntAPPRIS P1 TSL 2 BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm20660-201ENSMUST00000177515 289 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Snhg5-201ENSMUST00000180563 1004 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Mir7029-201ENSMUST00000184777 61 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm29397-201ENSMUST00000185205 333 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm28620-201ENSMUST00000190463 439 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Platr10-201ENSMUST00000190602 1026 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm37459-202ENSMUST00000195007 563 ntTSL 3 BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Mrln-201ENSMUST00000020090 443 ntAPPRIS P1 TSL 2 BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Tgif1-ps-201ENSMUST00000201864 736 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm44011-201ENSMUST00000203336 394 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm44427-201ENSMUST00000204123 456 ntTSL 3 BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm5027-201ENSMUST00000206700 375 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 LOC665443-201ENSMUST00000212284 796 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 1700061N14Rik-201ENSMUST00000212295 463 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm45879-201ENSMUST00000212521 392 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 RMST_1.1-213ENSMUST00000220288 792 ntTSL 5 BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm5457-201ENSMUST00000022260 333 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 AC113269.1-201ENSMUST00000227185 674 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 AC154627.3-201ENSMUST00000228441 334 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 3300002A11Rik-201ENSMUST00000046994 654 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Prr11-201ENSMUST00000051395 3824 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm24410-201ENSMUST00000083433 107 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm42955-201ENSMUST00000197355 3393 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Xcr1-201ENSMUST00000182350 4453 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Pde7a-201ENSMUST00000091314 4454 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Zfp81-201ENSMUST00000054072 6639 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm44679-201ENSMUST00000207202 2908 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Olfr959-203ENSMUST00000216298 5616 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Atf2-205ENSMUST00000112010 4037 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Atf2-202ENSMUST00000090802 4016 ntTSL 5 BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Prom1-206ENSMUST00000171543 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
Rnf40Q3U319 AC153532.3-201ENSMUST00000218660 3848 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 Vmn1r220-204ENSMUST00000227950 6238 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Scd4-201ENSMUST00000058856 3306 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
Rnf40Q3U319 Gm38118-201ENSMUST00000192052 2222 ntBASIC6.91□□□□□ -1.3
Rnf40Q3U319 4930555F03Rik-202ENSMUST00000126285 3604 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
Rnf40Q3U319 BC046251-201ENSMUST00000154632 3653 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm17767-202ENSMUST00000190169 3049 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Olfr1426-202ENSMUST00000208703 2546 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Olfr384-202ENSMUST00000214228 2576 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Usp29-201ENSMUST00000054055 2610 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Sugt1-201ENSMUST00000054908 7392 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Mat2a-201ENSMUST00000059472 2804 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm37186-201ENSMUST00000195629 2861 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Mir688-201ENSMUST00000102055 75 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Igkv13-84-201ENSMUST00000103339 347 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm25097-201ENSMUST00000104042 145 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm25631-201ENSMUST00000104390 130 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm22710-201ENSMUST00000116892 125 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm13250-201ENSMUST00000117209 753 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm14792-201ENSMUST00000119725 258 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm12123-201ENSMUST00000120348 472 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm15335-201ENSMUST00000122442 411 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 n-R5s19-201ENSMUST00000122793 120 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Halr1-201ENSMUST00000125374 391 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm11466-201ENSMUST00000148017 291 ntTSL 3 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm22562-201ENSMUST00000157334 111 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm24858-201ENSMUST00000158058 323 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Slc29a1-208ENSMUST00000164769 1226 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Il19-201ENSMUST00000016668 1021 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm17162-201ENSMUST00000168538 473 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Hspe1-ps3-201ENSMUST00000172726 277 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm17048-201ENSMUST00000179266 847 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm21028-201ENSMUST00000179470 123 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm23523-201ENSMUST00000180190 107 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Milr1-208ENSMUST00000183111 982 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm27167-201ENSMUST00000183752 511 ntTSL 3 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm28728-201ENSMUST00000189087 405 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 1700096J18Rik-201ENSMUST00000190043 482 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Lemd1-209ENSMUST00000191418 726 ntAPPRIS ALT2 TSL 2 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Ly6c2-204ENSMUST00000191451 538 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm28070-201ENSMUST00000191502 445 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Spcs2-203ENSMUST00000207137 881 ntTSL 5 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm6909-201ENSMUST00000209825 989 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Mir670hg-207ENSMUST00000211619 819 ntTSL 5 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 AC142273.1-201ENSMUST00000213723 673 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Olfr1333-202ENSMUST00000214477 2996 ntAPPRIS ALT2 TSL 3 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 CT572985.2-201ENSMUST00000220496 211 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 AC154623.1-201ENSMUST00000224348 805 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 AV026068-229ENSMUST00000225516 595 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 2900092C05Rik-201ENSMUST00000032541 887 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Kap-201ENSMUST00000048032 707 ntAPPRIS P2 TSL 1 (best) BASIC6.9□□□□□ -1.3
Rnf40Q3U319 A530021J07Rik-201ENSMUST00000066005 414 ntTSL 3 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Olfr530-201ENSMUST00000074177 1080 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm10092-201ENSMUST00000077110 180 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Gm6054-201ENSMUST00000078052 378 ntBASIC6.9□□□□□ -1.3
Rnf40Q3U319 Efna5-202ENSMUST00000078839 643 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
Retrieved 100 of 76,532 protein–RNA pairs in 89.3 ms