Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 1700054K02Rik-201ENSMUST00000181755 376 ntBASIC5.24□□□□□ -1.57
Hoxd3P09027 Gm19193-201ENSMUST00000190263 590 ntBASIC5.24□□□□□ -1.57
Hoxd3P09027 Gm43459-201ENSMUST00000202093 331 ntBASIC5.24□□□□□ -1.57
Hoxd3P09027 Gm43975-201ENSMUST00000203023 481 ntBASIC5.24□□□□□ -1.57
Hoxd3P09027 Gm43994-201ENSMUST00000203809 227 ntTSL 5 BASIC5.24□□□□□ -1.57
Hoxd3P09027 Gm31294-201ENSMUST00000211216 138 ntTSL 5 BASIC5.24□□□□□ -1.57
Hoxd3P09027 Gm46327-201ENSMUST00000218240 365 ntBASIC5.24□□□□□ -1.57
Hoxd3P09027 Nqo2-201ENSMUST00000021843 1063 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Hoxd3P09027 Gm17849-201ENSMUST00000219788 853 ntBASIC5.24□□□□□ -1.57
Hoxd3P09027 AC160031.1-201ENSMUST00000219914 522 ntBASIC5.24□□□□□ -1.57
Hoxd3P09027 AC158142.1-201ENSMUST00000226721 416 ntBASIC5.24□□□□□ -1.57
Hoxd3P09027 AC129017.1-201ENSMUST00000228363 270 ntBASIC5.24□□□□□ -1.57
Hoxd3P09027 Mir425-201ENSMUST00000083645 85 ntBASIC5.24□□□□□ -1.57
Hoxd3P09027 Rps19-ps4-201ENSMUST00000091925 438 ntBASIC5.24□□□□□ -1.57
Hoxd3P09027 Cylc1-201ENSMUST00000101282 1923 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
Hoxd3P09027 Nxt2-203ENSMUST00000112914 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Hoxd3P09027 E330035G20Rik-202ENSMUST00000223323 3578 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
Hoxd3P09027 Pik3ca-202ENSMUST00000108242 6171 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
Hoxd3P09027 Cpb2-201ENSMUST00000022576 1477 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Hoxd3P09027 Ralgapa2-205ENSMUST00000131824 5624 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
Hoxd3P09027 Bbx-201ENSMUST00000066037 4523 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
Hoxd3P09027 Psg17-201ENSMUST00000004655 2100 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Hoxd3P09027 Prkacb-203ENSMUST00000106137 4061 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
Hoxd3P09027 Cd44-207ENSMUST00000111194 5045 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
Hoxd3P09027 Adsl-201ENSMUST00000023043 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Hoxd3P09027 Gtpbp4-204ENSMUST00000222098 8783 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Hoxd3P09027 Gm21036-201ENSMUST00000207544 2611 ntBASIC5.24□□□□□ -1.57
Hoxd3P09027 Pcmtd2-202ENSMUST00000108754 3499 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
Hoxd3P09027 Gm45876-201ENSMUST00000212698 2709 ntBASIC5.24□□□□□ -1.57
Hoxd3P09027 Gm16513-201ENSMUST00000101023 2832 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Hoxd3P09027 Slc7a11-201ENSMUST00000029297 9223 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm10466-201ENSMUST00000101450 2466 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Olfr1351-202ENSMUST00000216030 2489 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm15088-201ENSMUST00000117973 1508 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm15098-201ENSMUST00000119036 1508 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm5512-202ENSMUST00000220222 1522 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Olfr305-202ENSMUST00000213255 3749 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
Hoxd3P09027 Mef2c-228ENSMUST00000199450 2862 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 AC144772.2-201ENSMUST00000228830 2859 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Ifi208-201ENSMUST00000085876 2990 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Tnfsf4-201ENSMUST00000028024 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Uba1y-201ENSMUST00000115894 3981 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
Hoxd3P09027 CT009757.4-201ENSMUST00000221520 2541 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Zcchc7-208ENSMUST00000147272 4251 ntTSL 2 BASIC5.23□□□□□ -1.57
Hoxd3P09027 Zfp143-205ENSMUST00000211798 2631 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Vmn1r9-203ENSMUST00000228714 4573 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
Hoxd3P09027 Tcaf3-201ENSMUST00000069023 3110 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Olfr1423-202ENSMUST00000214472 5570 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm23748-201ENSMUST00000104227 131 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm5938-201ENSMUST00000114030 775 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm24586-201ENSMUST00000116695 89 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm12135-201ENSMUST00000119170 466 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm16017-201ENSMUST00000119834 208 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm15835-201ENSMUST00000127697 356 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm24780-201ENSMUST00000157635 143 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm25717-201ENSMUST00000158631 353 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm23704-201ENSMUST00000158844 340 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm22263-201ENSMUST00000180060 104 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm9022-202ENSMUST00000183285 483 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Ly6c2-203ENSMUST00000188214 638 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm36935-201ENSMUST00000192526 292 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm8860-201ENSMUST00000193160 445 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Ighv5-19-201ENSMUST00000193466 297 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Igkv4-75-201ENSMUST00000197204 359 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm35013-201ENSMUST00000197218 832 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 LOC665443-201ENSMUST00000212284 796 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 AC148328.2-201ENSMUST00000216960 262 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 AC158606.1-201ENSMUST00000220078 325 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 AC150661.1-201ENSMUST00000222563 495 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 AC133498.1-206ENSMUST00000223254 385 ntTSL 5 BASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm8256-203ENSMUST00000228692 591 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 AC163664.2-201ENSMUST00000228894 459 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Sprr2i-201ENSMUST00000047264 617 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm2710-201ENSMUST00000073196 603 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Snord47-201ENSMUST00000083034 77 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm29486-201ENSMUST00000088648 372 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm26329-201ENSMUST00000093723 110 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Fancd2-208ENSMUST00000204827 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Cyld-202ENSMUST00000098519 7954 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
Hoxd3P09027 Vmn1r71-203ENSMUST00000227003 5048 ntAPPRIS P2 BASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm30382-203ENSMUST00000199503 1858 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 AC163660.4-201ENSMUST00000224983 2171 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Gm16142-201ENSMUST00000130584 2850 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Emsy-207ENSMUST00000205911 5079 ntTSL 5 BASIC5.23□□□□□ -1.57
Hoxd3P09027 Fryl-201ENSMUST00000094700 9852 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
Hoxd3P09027 Olfr845-202ENSMUST00000213344 3530 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
Hoxd3P09027 BC067074-201ENSMUST00000078163 3546 ntTSL 5 BASIC5.23□□□□□ -1.57
Hoxd3P09027 Ptpn22-201ENSMUST00000029433 2743 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 5730408A14Rik-201ENSMUST00000194955 1824 ntBASIC5.23□□□□□ -1.57
Hoxd3P09027 Tek-203ENSMUST00000102798 4654 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Mmp1b-201ENSMUST00000047888 1449 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Ezh1-203ENSMUST00000107285 4193 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Dock7-202ENSMUST00000075836 6704 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
Hoxd3P09027 Impg2-204ENSMUST00000160116 3992 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
Hoxd3P09027 Vmn2r88-201ENSMUST00000022438 2574 ntAPPRIS P2 TSL 5 BASIC5.22□□□□□ -1.57
Hoxd3P09027 Prokr2-204ENSMUST00000142766 3932 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
Hoxd3P09027 Eaf2-202ENSMUST00000075946 1878 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
Hoxd3P09027 Gm21051-201ENSMUST00000221757 1688 ntBASIC5.22□□□□□ -1.57
Hoxd3P09027 Gm30948-201ENSMUST00000195683 4827 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
Hoxd3P09027 Mfap3-201ENSMUST00000020830 4839 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
Retrieved 100 of 76,532 protein–RNA pairs in 86.7 ms