Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm14018-201ENSMUST00000119042 455 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm11881-201ENSMUST00000119408 572 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm14852-201ENSMUST00000120065 647 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm12267-201ENSMUST00000121609 761 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm11716-201ENSMUST00000154414 470 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
RaraP11416 Gm16161-201ENSMUST00000162239 290 ntTSL 2 BASIC6.33□□□□□ -1.4
RaraP11416 Gm7008-203ENSMUST00000171356 476 ntTSL 2 BASIC6.33□□□□□ -1.4
RaraP11416 Gm5709-201ENSMUST00000177879 1165 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm8356-203ENSMUST00000178896 615 ntTSL 5 BASIC6.33□□□□□ -1.4
RaraP11416 Mir6992-201ENSMUST00000183342 109 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm27976-201ENSMUST00000183635 162 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm27266-201ENSMUST00000184521 123 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm5116-201ENSMUST00000187732 463 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm29627-201ENSMUST00000187984 463 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm38050-201ENSMUST00000191904 238 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm35013-201ENSMUST00000197218 832 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm43315-201ENSMUST00000198120 313 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm43688-201ENSMUST00000202249 310 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
RaraP11416 Gm44040-201ENSMUST00000203360 545 ntTSL 3 BASIC6.33□□□□□ -1.4
RaraP11416 Gm44970-201ENSMUST00000206318 314 ntTSL 3 BASIC6.33□□□□□ -1.4
RaraP11416 Gm45556-201ENSMUST00000210689 345 ntTSL 5 BASIC6.33□□□□□ -1.4
RaraP11416 Gm45303-201ENSMUST00000211239 676 ntTSL 3 BASIC6.33□□□□□ -1.4
RaraP11416 Gm45724-201ENSMUST00000213031 420 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm6104-201ENSMUST00000078030 603 ntBASIC6.33□□□□□ -1.4
RaraP11416 Gm23093-201ENSMUST00000083450 102 ntBASIC6.33□□□□□ -1.4
RaraP11416 Fam183b-202ENSMUST00000094156 567 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
RaraP11416 C87977-203ENSMUST00000105755 1802 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
RaraP11416 Olfr1499-202ENSMUST00000216659 1834 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
RaraP11416 Olfr328-204ENSMUST00000216725 2904 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
RaraP11416 Nt5c3-202ENSMUST00000101367 1519 ntAPPRIS ALT1 TSL 1 (best) BASIC6.33□□□□□ -1.4
RaraP11416 Olfr1026-202ENSMUST00000217615 1538 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
RaraP11416 Acvr1c-202ENSMUST00000100085 4289 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
RaraP11416 Mcmdc2-205ENSMUST00000171802 2553 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
RaraP11416 Gm33680-203ENSMUST00000219610 4117 ntTSL 3 BASIC6.33□□□□□ -1.4
RaraP11416 Pik3c2g-202ENSMUST00000087657 3303 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
RaraP11416 Gm26789-201ENSMUST00000181342 2502 ntTSL 5 BASIC6.33□□□□□ -1.4
RaraP11416 Kcnma1-208ENSMUST00000177634 4605 ntTSL 5 BASIC6.33□□□□□ -1.4
RaraP11416 Gabrg2-202ENSMUST00000070735 2234 ntAPPRIS P4 TSL 1 (best) BASIC6.33□□□□□ -1.4
RaraP11416 Gm38137-201ENSMUST00000193735 1401 ntBASIC6.33□□□□□ -1.4
RaraP11416 Homer1-202ENSMUST00000079086 4287 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
RaraP11416 Olfr670-202ENSMUST00000214216 3729 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
RaraP11416 Vmn2r-ps123-201ENSMUST00000176763 2410 ntBASIC6.33□□□□□ -1.4
RaraP11416 Samd12-201ENSMUST00000078673 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RaraP11416 Gm43201-201ENSMUST00000195925 3416 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm37250-201ENSMUST00000194919 2388 ntBASIC6.32□□□□□ -1.4
RaraP11416 Olfr204-202ENSMUST00000216261 5371 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
RaraP11416 B230217J21Rik-201ENSMUST00000218349 3896 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RaraP11416 AC130827.1-201ENSMUST00000220476 3850 ntBASIC6.32□□□□□ -1.4
RaraP11416 AC121942.1-201ENSMUST00000224459 2891 ntBASIC6.32□□□□□ -1.4
RaraP11416 Grin2b-201ENSMUST00000053880 24060 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
RaraP11416 Ulbp1-202ENSMUST00000177585 3815 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
RaraP11416 Gm6866-202ENSMUST00000206653 3081 ntTSL 5 BASIC6.32□□□□□ -1.4
RaraP11416 Gm10415-201ENSMUST00000204181 2825 ntTSL 2 BASIC6.32□□□□□ -1.4
RaraP11416 Olfr1305-202ENSMUST00000213405 1815 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
RaraP11416 Olfr1342-202ENSMUST00000216226 3269 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
RaraP11416 Olfr736-205ENSMUST00000215263 2255 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
RaraP11416 Nfib-201ENSMUST00000050872 8770 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RaraP11416 Gm43900-201ENSMUST00000204868 2669 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm15382-201ENSMUST00000118011 537 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm9308-201ENSMUST00000119073 448 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm14362-201ENSMUST00000121679 273 ntBASIC6.32□□□□□ -1.4
RaraP11416 Rpl26-ps5-201ENSMUST00000122220 439 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm11216-201ENSMUST00000125240 354 ntTSL 5 BASIC6.32□□□□□ -1.4
RaraP11416 Vmn1r239-ps-201ENSMUST00000127465 960 ntBASIC6.32□□□□□ -1.4
RaraP11416 Nell1os-201ENSMUST00000134584 489 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RaraP11416 Gm12343-201ENSMUST00000138817 414 ntTSL 3 BASIC6.32□□□□□ -1.4
RaraP11416 AI646519-201ENSMUST00000140987 351 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RaraP11416 Gm15017-201ENSMUST00000141989 632 ntTSL 5 BASIC6.32□□□□□ -1.4
RaraP11416 Gm15254-201ENSMUST00000149567 273 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm24737-201ENSMUST00000158861 100 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm16290-201ENSMUST00000161175 474 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm3084-201ENSMUST00000169967 598 ntBASIC6.32□□□□□ -1.4
RaraP11416 A730017C20Rik-206ENSMUST00000175830 731 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
RaraP11416 Mir6989-201ENSMUST00000184812 65 ntBASIC6.32□□□□□ -1.4
RaraP11416 1700027A15Rik-202ENSMUST00000188349 617 ntTSL 3 BASIC6.32□□□□□ -1.4
RaraP11416 1700108F19Rik-203ENSMUST00000188798 619 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RaraP11416 Lax1-202ENSMUST00000189524 628 ntTSL 2 BASIC6.32□□□□□ -1.4
RaraP11416 Gm8823-201ENSMUST00000193158 433 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm42522-201ENSMUST00000196071 255 ntBASIC6.32□□□□□ -1.4
RaraP11416 Mir142-201ENSMUST00000198092 64 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm19147-201ENSMUST00000199622 652 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm36159-201ENSMUST00000206737 549 ntTSL 3 BASIC6.32□□□□□ -1.4
RaraP11416 BC024386-204ENSMUST00000209842 688 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RaraP11416 Gm45857-201ENSMUST00000212207 356 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm45727-201ENSMUST00000212886 572 ntBASIC6.32□□□□□ -1.4
RaraP11416 Rab7-ps1-201ENSMUST00000213253 622 ntBASIC6.32□□□□□ -1.4
RaraP11416 Olfr1035-ps1-202ENSMUST00000213364 288 ntTSL 5 BASIC6.32□□□□□ -1.4
RaraP11416 Gm3442-201ENSMUST00000216808 710 ntBASIC6.32□□□□□ -1.4
RaraP11416 AC140930.1-201ENSMUST00000221889 389 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm19154-201ENSMUST00000223330 940 ntBASIC6.32□□□□□ -1.4
RaraP11416 AC154598.1-201ENSMUST00000227079 347 ntBASIC6.32□□□□□ -1.4
RaraP11416 AC163646.1-201ENSMUST00000227704 397 ntBASIC6.32□□□□□ -1.4
RaraP11416 Gm8256-203ENSMUST00000228692 591 ntBASIC6.32□□□□□ -1.4
RaraP11416 Glipr1l1-201ENSMUST00000073617 896 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RaraP11416 Dph3b-ps-201ENSMUST00000076359 246 ntBASIC6.32□□□□□ -1.4
RaraP11416 Magea6-201ENSMUST00000076986 1201 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RaraP11416 Cpa6-201ENSMUST00000035577 1932 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RaraP11416 F830016B08Rik-201ENSMUST00000171297 3297 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RaraP11416 Prdm9-206ENSMUST00000167994 3460 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RaraP11416 Celf2-201ENSMUST00000002176 7718 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
Retrieved 100 of 76,532 protein–RNA pairs in 86.6 ms