Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm37115-201ENSMUST00000193750 2849 ntBASIC5.52□□□□□ -1.53
Traf1P39428 Gm19619-201ENSMUST00000200707 3201 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
Traf1P39428 Msr1-202ENSMUST00000170091 3636 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
Traf1P39428 Gm37628-201ENSMUST00000194644 5440 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Hmcn1-201ENSMUST00000074783 17908 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
Traf1P39428 Gm37053-201ENSMUST00000192399 2087 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Gm15262-202ENSMUST00000207320 5010 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
Traf1P39428 Gm24469-201ENSMUST00000104487 131 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Smpx-202ENSMUST00000112520 503 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
Traf1P39428 BC117090-201ENSMUST00000114850 387 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
Traf1P39428 Gm14786-201ENSMUST00000117127 944 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Gm14082-201ENSMUST00000118582 801 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Gm11274-201ENSMUST00000146857 481 ntTSL 2 BASIC5.51□□□□□ -1.53
Traf1P39428 Gm15414-201ENSMUST00000155217 440 ntTSL 3 BASIC5.51□□□□□ -1.53
Traf1P39428 Gm22588-201ENSMUST00000157510 140 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Gm22084-201ENSMUST00000157585 105 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Gm25923-201ENSMUST00000158312 138 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Gm25714-201ENSMUST00000158626 296 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Gm23179-201ENSMUST00000158693 304 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Aste1-207ENSMUST00000176940 1151 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
Traf1P39428 1700025F22Rik-203ENSMUST00000181284 562 ntTSL 3 BASIC5.51□□□□□ -1.53
Traf1P39428 Mir6410-201ENSMUST00000184204 104 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Gm29086-201ENSMUST00000186774 222 ntBASIC5.51□□□□□ -1.53
Traf1P39428 1700027H10Rik-201ENSMUST00000186818 584 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
Traf1P39428 Gm29085-201ENSMUST00000187108 225 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Hmgn3-205ENSMUST00000187193 855 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
Traf1P39428 Gm29610-201ENSMUST00000187749 453 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Il3-201ENSMUST00000019058 629 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
Traf1P39428 4922502N22Rik-201ENSMUST00000204038 1149 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
Traf1P39428 Gm45078-201ENSMUST00000205343 546 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Gm44817-201ENSMUST00000205416 453 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Gm19170-201ENSMUST00000212440 1084 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Aoah-202ENSMUST00000221982 919 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
Traf1P39428 Olfr904-201ENSMUST00000058153 933 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
Traf1P39428 Olfr736-201ENSMUST00000058965 939 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
Traf1P39428 Gm10115-201ENSMUST00000076071 1228 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Olfr898-201ENSMUST00000076504 951 ntAPPRIS P2 BASIC5.51□□□□□ -1.53
Traf1P39428 Gm6065-201ENSMUST00000081336 492 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Gm23058-201ENSMUST00000093703 107 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Olfr1104-201ENSMUST00000099869 933 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
Traf1P39428 Gm6043-201ENSMUST00000099961 492 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Ptgs2os-202ENSMUST00000181915 2937 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
Traf1P39428 Gm40909-202ENSMUST00000223275 5564 ntTSL 5 BASIC5.51□□□□□ -1.53
Traf1P39428 Themis-202ENSMUST00000060409 2278 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
Traf1P39428 Vmn1r197-203ENSMUST00000227017 5158 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
Traf1P39428 Emcn-201ENSMUST00000119475 1357 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
Traf1P39428 Vmn2r-ps82-201ENSMUST00000174222 1641 ntBASIC5.51□□□□□ -1.53
Traf1P39428 Ms4a7-201ENSMUST00000025574 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
Traf1P39428 C130079G13Rik-201ENSMUST00000049476 2789 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
Traf1P39428 Klhl28-203ENSMUST00000222508 6459 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
Traf1P39428 Olfr203-202ENSMUST00000215893 1521 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
Traf1P39428 Mndal-202ENSMUST00000186442 1646 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
Traf1P39428 Gm23948-201ENSMUST00000104030 132 ntBASIC5.5□□□□□ -1.53
Traf1P39428 Gm11905-201ENSMUST00000117653 678 ntBASIC5.5□□□□□ -1.53
Traf1P39428 Gm22514-201ENSMUST00000122547 308 ntBASIC5.5□□□□□ -1.53
Traf1P39428 Gm25806-201ENSMUST00000122782 122 ntBASIC5.5□□□□□ -1.53
Traf1P39428 Olfr405-ps1-202ENSMUST00000127098 711 ntTSL 3 BASIC5.5□□□□□ -1.53
Traf1P39428 Gm14003-201ENSMUST00000130919 313 ntTSL 3 BASIC5.5□□□□□ -1.53
Traf1P39428 Gm12711-201ENSMUST00000131249 340 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
Traf1P39428 Gm17025-201ENSMUST00000133273 580 ntTSL 2 BASIC5.5□□□□□ -1.53
Traf1P39428 Crem-219ENSMUST00000140332 1015 ntTSL 5 BASIC5.5□□□□□ -1.53
Traf1P39428 Snora81-201ENSMUST00000157310 178 ntBASIC5.5□□□□□ -1.53
Traf1P39428 Gm26085-201ENSMUST00000157900 116 ntBASIC5.5□□□□□ -1.53
Traf1P39428 4930486I03Rik-201ENSMUST00000161509 788 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
Traf1P39428 Mir6943-201ENSMUST00000185186 66 ntBASIC5.5□□□□□ -1.53
Traf1P39428 1700027A15Rik-202ENSMUST00000188349 617 ntTSL 3 BASIC5.5□□□□□ -1.53
Traf1P39428 Fbxw27-201ENSMUST00000197125 810 ntAPPRIS P2 TSL 3 BASIC5.5□□□□□ -1.53
Traf1P39428 1700016F12Rik-201ENSMUST00000198159 655 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
Traf1P39428 Gm43036-201ENSMUST00000200594 373 ntBASIC5.5□□□□□ -1.53
Traf1P39428 Gm40323-201ENSMUST00000200649 645 ntTSL 2 BASIC5.5□□□□□ -1.53
Traf1P39428 Gm5373-201ENSMUST00000212113 1050 ntBASIC5.5□□□□□ -1.53
Traf1P39428 AC153729.2-201ENSMUST00000215166 560 ntTSL 3 BASIC5.5□□□□□ -1.53
Traf1P39428 Olfr44-203ENSMUST00000216316 1078 ntAPPRIS ALT2 TSL 3 BASIC5.5□□□□□ -1.53
Traf1P39428 Tas2r104-201ENSMUST00000072404 909 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
Traf1P39428 Olfr135-201ENSMUST00000076245 1079 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
Traf1P39428 Olfr44-201ENSMUST00000077757 1071 ntAPPRIS P2 TSL 3 BASIC5.5□□□□□ -1.53
Traf1P39428 Gm23300-201ENSMUST00000082712 125 ntBASIC5.5□□□□□ -1.53
Traf1P39428 Gm26072-201ENSMUST00000083135 107 ntBASIC5.5□□□□□ -1.53
Traf1P39428 Olfr1297-201ENSMUST00000099612 939 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
Traf1P39428 Btbd35f13-201ENSMUST00000177912 1701 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
Traf1P39428 Gm13084-201ENSMUST00000075045 1805 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
Traf1P39428 1700080O16Rik-201ENSMUST00000033449 1454 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
Traf1P39428 Btbd35f15-201ENSMUST00000186329 1917 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
Traf1P39428 Nr3c2-202ENSMUST00000109911 3804 ntTSL 5 BASIC5.5□□□□□ -1.53
Traf1P39428 Zfp280c-201ENSMUST00000072292 4045 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
Traf1P39428 Gm43266-201ENSMUST00000201049 1771 ntBASIC5.5□□□□□ -1.53
Traf1P39428 AC124556.1-201ENSMUST00000218256 1319 ntBASIC5.49□□□□□ -1.53
Traf1P39428 Nxf3-201ENSMUST00000080929 2978 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
Traf1P39428 Slc5a12-201ENSMUST00000045972 3529 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
Traf1P39428 Oxr1-202ENSMUST00000090095 4156 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
Traf1P39428 Gm43166-201ENSMUST00000202871 4379 ntTSL 5 BASIC5.49□□□□□ -1.53
Traf1P39428 AC147639.2-202ENSMUST00000224834 1545 ntBASIC5.49□□□□□ -1.53
Traf1P39428 Gm43920-201ENSMUST00000204953 2159 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
Traf1P39428 Vmn1r39-207ENSMUST00000228862 2398 ntAPPRIS P2 BASIC5.49□□□□□ -1.53
Traf1P39428 Gm43312-201ENSMUST00000201655 2466 ntBASIC5.49□□□□□ -1.53
Traf1P39428 Fpgt-201ENSMUST00000066568 3518 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
Traf1P39428 Brip1-201ENSMUST00000044423 6931 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
Traf1P39428 Rps19-ps7-201ENSMUST00000116122 438 ntBASIC5.49□□□□□ -1.53
Traf1P39428 Cnep1r1-202ENSMUST00000117775 728 ntTSL 3 BASIC5.49□□□□□ -1.53
Traf1P39428 Ttc29-203ENSMUST00000117845 650 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
Retrieved 100 of 76,532 protein–RNA pairs in 75.7 ms