Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm25418-201ENSMUST00000104214 129 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm10552-201ENSMUST00000113396 372 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm11673-201ENSMUST00000117846 331 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Hbb-bh3-201ENSMUST00000118954 266 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Hmgb1-ps1-201ENSMUST00000119350 634 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm13533-201ENSMUST00000121104 177 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Cyp2j7-ps3-201ENSMUST00000121405 206 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Tctex1d1-203ENSMUST00000125417 859 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm11507-201ENSMUST00000156462 412 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm25150-201ENSMUST00000157121 60 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Mir1963-201ENSMUST00000158594 59 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm2012-202ENSMUST00000163263 892 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm6121-202ENSMUST00000167438 893 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Vmn1r174-201ENSMUST00000167551 942 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm3182-202ENSMUST00000169364 997 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm7876-201ENSMUST00000169465 984 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm6337-202ENSMUST00000170613 997 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Vmn1r173-201ENSMUST00000174055 942 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm18595-201ENSMUST00000175736 1068 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Rab26os-201ENSMUST00000176215 477 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Nutf2-ps2-201ENSMUST00000179225 384 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Obox8-201ENSMUST00000184356 1167 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm4557-201ENSMUST00000185826 907 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm4526-201ENSMUST00000186039 920 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm28859-201ENSMUST00000186650 616 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 1810064F22Rik-202ENSMUST00000187399 630 ntTSL 3 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm8708-201ENSMUST00000188500 906 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 1700006P03Rik-201ENSMUST00000191810 409 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm10292-202ENSMUST00000193165 585 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm43531-201ENSMUST00000200676 1114 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm44648-201ENSMUST00000208267 329 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm45411-201ENSMUST00000209647 345 ntTSL 5 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Mbd3l1-202ENSMUST00000213625 823 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 AC159819.1-201ENSMUST00000213911 328 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 AC108401.1-201ENSMUST00000219740 361 ntTSL 3 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Il9-201ENSMUST00000022019 536 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 AC098742.1-201ENSMUST00000227945 373 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Olfr829-201ENSMUST00000058411 966 ntAPPRIS P2 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm8724-201ENSMUST00000081668 483 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Olfr1281-201ENSMUST00000090326 918 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Olfr774-201ENSMUST00000097164 939 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Olfr599-201ENSMUST00000098201 1050 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Spint3-201ENSMUST00000099097 557 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Zfp850-201ENSMUST00000099111 941 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Olfr1037-201ENSMUST00000099911 1125 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Cnot6l-210ENSMUST00000155901 8564 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm43010-201ENSMUST00000195993 2878 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Hbp1-206ENSMUST00000176103 1319 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Ptgs2os-202ENSMUST00000181915 2937 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Cyld-204ENSMUST00000209206 4032 ntTSL 5 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Olfr612-202ENSMUST00000214269 2420 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 1700091H14Rik-202ENSMUST00000185725 1388 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Cbll1-205ENSMUST00000188326 1399 ntTSL 2 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm30292-201ENSMUST00000194198 3000 ntTSL 3 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Zfp808-204ENSMUST00000221772 1379 ntTSL 5 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Zfp788-201ENSMUST00000045720 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Ctsj-202ENSMUST00000224224 1421 ntAPPRIS ALT2 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Mmp1a-201ENSMUST00000034492 2022 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Pign-205ENSMUST00000186485 6759 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Sbno1-201ENSMUST00000065263 10071 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Gm38032-201ENSMUST00000195052 1589 ntBASIC4.36□□□□□ -1.71
Trim40Q3UWA4 Kcnt2-203ENSMUST00000120796 3540 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Rabgap1-202ENSMUST00000066055 4247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm37345-201ENSMUST00000193062 3138 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm38307-201ENSMUST00000195630 1840 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Neb-202ENSMUST00000036934 22489 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Ighv9-4-201ENSMUST00000103482 294 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Trav2-201ENSMUST00000103568 325 ntAPPRIS ALT2 BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm11020-201ENSMUST00000109447 186 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Clec1b-203ENSMUST00000112081 614 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm14854-201ENSMUST00000117758 841 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Olfr990-ps1-201ENSMUST00000120485 904 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm14601-201ENSMUST00000120892 236 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm14302-201ENSMUST00000122806 382 ntTSL 3 BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm15962-201ENSMUST00000124184 750 ntTSL 3 BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm13147-201ENSMUST00000125785 585 ntTSL 2 BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 5730412P04Rik-201ENSMUST00000147100 1149 ntTSL 5 BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Nr6a1os-202ENSMUST00000151229 525 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm25271-201ENSMUST00000157273 290 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm26487-201ENSMUST00000158022 94 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm22940-201ENSMUST00000158560 155 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm10319-202ENSMUST00000159439 846 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm3030-201ENSMUST00000163410 516 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm3339-201ENSMUST00000163462 475 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm6245-201ENSMUST00000164699 768 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm8265-201ENSMUST00000170469 475 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm17268-201ENSMUST00000171515 66 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm3496-201ENSMUST00000188283 745 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Galntl6-205ENSMUST00000188531 1056 ntTSL 5 BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm19280-201ENSMUST00000190191 205 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm30667-201ENSMUST00000193120 870 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm36939-201ENSMUST00000194889 439 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm38334-201ENSMUST00000195060 313 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm42539-201ENSMUST00000197009 308 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm44376-201ENSMUST00000197570 128 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Traj59-202ENSMUST00000197589 62 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm5288-201ENSMUST00000198323 1119 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Trdn-202ENSMUST00000217779 1182 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
Trim40Q3UWA4 AC174776.1-201ENSMUST00000221509 405 ntBASIC4.35□□□□□ -1.71
Trim40Q3UWA4 Gm7822-201ENSMUST00000222433 581 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 76,532 protein–RNA pairs in 96.8 ms