Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.33■□□□□ 0.69
Prpf40aQ9R1C7 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Prpf40aQ9R1C7 Gm37374-201ENSMUST00000194954 1829 ntBASIC19.33■□□□□ 0.69
Prpf40aQ9R1C7 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Prpf40aQ9R1C7 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Prpf40aQ9R1C7 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
Prpf40aQ9R1C7 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Prpf40aQ9R1C7 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Prpf40aQ9R1C7 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC19.32■□□□□ 0.68
Prpf40aQ9R1C7 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.32■□□□□ 0.68
Prpf40aQ9R1C7 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Prpf40aQ9R1C7 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Prpf40aQ9R1C7 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Prpf40aQ9R1C7 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.32■□□□□ 0.68
Prpf40aQ9R1C7 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Prpf40aQ9R1C7 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Prpf40aQ9R1C7 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 Gm13158-201ENSMUST00000122007 736 ntBASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 Gm44878-201ENSMUST00000205812 1295 ntBASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prpf40aQ9R1C7 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Gm10653-202ENSMUST00000139570 835 ntBASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Gm18666-201ENSMUST00000190039 958 ntBASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Gm10138-203ENSMUST00000206952 366 ntBASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prpf40aQ9R1C7 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Prpf40aQ9R1C7 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Prpf40aQ9R1C7 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Prpf40aQ9R1C7 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Prpf40aQ9R1C7 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC19.28■□□□□ 0.68
Prpf40aQ9R1C7 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Prpf40aQ9R1C7 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
Prpf40aQ9R1C7 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Prpf40aQ9R1C7 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC19.28■□□□□ 0.68
Prpf40aQ9R1C7 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Prpf40aQ9R1C7 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC19.28■□□□□ 0.68
Prpf40aQ9R1C7 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Prpf40aQ9R1C7 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Prpf40aQ9R1C7 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms