Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddx56Q9D0R4 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC18.49■□□□□ 0.55
Ddx56Q9D0R4 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddx56Q9D0R4 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddx56Q9D0R4 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Ddx56Q9D0R4 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ddx56Q9D0R4 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddx56Q9D0R4 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddx56Q9D0R4 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ddx56Q9D0R4 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Gm18666-201ENSMUST00000190039 958 ntBASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddx56Q9D0R4 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 AC135637.1-201ENSMUST00000227750 365 ntBASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ddx56Q9D0R4 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddx56Q9D0R4 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Ddx56Q9D0R4 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddx56Q9D0R4 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddx56Q9D0R4 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Ddx56Q9D0R4 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.46■□□□□ 0.55
Ddx56Q9D0R4 Gm44878-201ENSMUST00000205812 1295 ntBASIC18.46■□□□□ 0.55
Ddx56Q9D0R4 Gm18025-201ENSMUST00000221733 862 ntBASIC18.46■□□□□ 0.55
Ddx56Q9D0R4 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
Ddx56Q9D0R4 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddx56Q9D0R4 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Ddx56Q9D0R4 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddx56Q9D0R4 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddx56Q9D0R4 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddx56Q9D0R4 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddx56Q9D0R4 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddx56Q9D0R4 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddx56Q9D0R4 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddx56Q9D0R4 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
Ddx56Q9D0R4 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddx56Q9D0R4 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddx56Q9D0R4 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddx56Q9D0R4 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC18.45■□□□□ 0.54
Ddx56Q9D0R4 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddx56Q9D0R4 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddx56Q9D0R4 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Nrn1-203ENSMUST00000223611 1443 ntBASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Gm6576-201ENSMUST00000169678 883 ntBASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 H2-K2-201ENSMUST00000174250 1049 ntBASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddx56Q9D0R4 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ddx56Q9D0R4 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ddx56Q9D0R4 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ddx56Q9D0R4 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Ddx56Q9D0R4 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms