Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smc1aQ9CU62 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smc1aQ9CU62 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC19.64■□□□□ 0.73
Smc1aQ9CU62 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smc1aQ9CU62 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Smc1aQ9CU62 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Smc1aQ9CU62 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
Smc1aQ9CU62 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Smc1aQ9CU62 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smc1aQ9CU62 Fcho2-208ENSMUST00000224992 2964 ntBASIC19.64■□□□□ 0.73
Smc1aQ9CU62 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smc1aQ9CU62 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Smc1aQ9CU62 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC19.63■□□□□ 0.73
Smc1aQ9CU62 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Zcchc6-207ENSMUST00000225576 2499 ntBASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Gm2399-201ENSMUST00000104944 225 ntBASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Gm715-201ENSMUST00000117865 831 ntBASIC19.62■□□□□ 0.73
Smc1aQ9CU62 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smc1aQ9CU62 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smc1aQ9CU62 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smc1aQ9CU62 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.61■□□□□ 0.73
Smc1aQ9CU62 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smc1aQ9CU62 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smc1aQ9CU62 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smc1aQ9CU62 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC19.61■□□□□ 0.73
Smc1aQ9CU62 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Smc1aQ9CU62 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smc1aQ9CU62 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smc1aQ9CU62 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smc1aQ9CU62 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Smc1aQ9CU62 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Gm19094-201ENSMUST00000209791 1246 ntBASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Smc1aQ9CU62 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Smc1aQ9CU62 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.59■□□□□ 0.73
Smc1aQ9CU62 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Smc1aQ9CU62 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Smc1aQ9CU62 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Smc1aQ9CU62 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
Smc1aQ9CU62 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.59■□□□□ 0.73
Smc1aQ9CU62 AL672049.1-201ENSMUST00000197943 91 ntBASIC19.59■□□□□ 0.73
Smc1aQ9CU62 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.59■□□□□ 0.73
Smc1aQ9CU62 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Smc1aQ9CU62 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Smc1aQ9CU62 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Smc1aQ9CU62 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Smc1aQ9CU62 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.59■□□□□ 0.73
Smc1aQ9CU62 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Smc1aQ9CU62 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Smc1aQ9CU62 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Smc1aQ9CU62 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Smc1aQ9CU62 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
Smc1aQ9CU62 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Smc1aQ9CU62 Gm15378-201ENSMUST00000121894 207 ntBASIC19.58■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms