Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Mir6982-201ENSMUST00000184354 68 ntBASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Gm18025-201ENSMUST00000221733 862 ntBASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Smarca1Q6PGB8 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
Smarca1Q6PGB8 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
Smarca1Q6PGB8 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Gm715-201ENSMUST00000117865 831 ntBASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Gm29241-201ENSMUST00000189260 1096 ntBASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smarca1Q6PGB8 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smarca1Q6PGB8 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Gm43294-201ENSMUST00000202850 2490 ntBASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC19.49■□□□□ 0.71
Smarca1Q6PGB8 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smarca1Q6PGB8 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smarca1Q6PGB8 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smarca1Q6PGB8 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Smarca1Q6PGB8 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.48■□□□□ 0.71
Smarca1Q6PGB8 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC19.48■□□□□ 0.71
Smarca1Q6PGB8 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Smarca1Q6PGB8 Gm43183-201ENSMUST00000200632 547 ntBASIC19.48■□□□□ 0.71
Smarca1Q6PGB8 AC158538.1-201ENSMUST00000225870 294 ntBASIC19.48■□□□□ 0.71
Smarca1Q6PGB8 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smarca1Q6PGB8 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smarca1Q6PGB8 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Smarca1Q6PGB8 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.48■□□□□ 0.71
Smarca1Q6PGB8 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms