Protein–RNA interactions for Protein: Q6IFX4

Krt39, Keratin, type I cytoskeletal 39, mousemouse

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Krt39Q6IFX4 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Krt39Q6IFX4 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Krt39Q6IFX4 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Krt39Q6IFX4 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Krt39Q6IFX4 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Krt39Q6IFX4 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC19.45■□□□□ 0.7
Krt39Q6IFX4 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC19.44■□□□□ 0.7
Krt39Q6IFX4 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Krt39Q6IFX4 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Gm38285-201ENSMUST00000192928 922 ntBASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Krt39Q6IFX4 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 AC125311.2-201ENSMUST00000227477 1940 ntBASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Gm37820-201ENSMUST00000194021 2147 ntBASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Krt39Q6IFX4 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Krt39Q6IFX4 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
Krt39Q6IFX4 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Krt39Q6IFX4 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Krt39Q6IFX4 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Krt39Q6IFX4 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Krt39Q6IFX4 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.4■□□□□ 0.7
Krt39Q6IFX4 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Krt39Q6IFX4 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Krt39Q6IFX4 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Krt39Q6IFX4 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Krt39Q6IFX4 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
Krt39Q6IFX4 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC19.4■□□□□ 0.7
Krt39Q6IFX4 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms