Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Krtap5-1-202ENSMUST00000188274 742 ntBASIC20.68■□□□□ 0.9
Limch1Q3UH68 Gm29994-201ENSMUST00000195495 1193 ntBASIC20.68■□□□□ 0.9
Limch1Q3UH68 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Gm37194-201ENSMUST00000193092 3031 ntBASIC20.68■□□□□ 0.9
Limch1Q3UH68 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Gm13158-201ENSMUST00000122007 736 ntBASIC20.67■□□□□ 0.9
Limch1Q3UH68 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Limch1Q3UH68 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC20.67■□□□□ 0.9
Limch1Q3UH68 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
Limch1Q3UH68 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
Limch1Q3UH68 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Limch1Q3UH68 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Limch1Q3UH68 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Limch1Q3UH68 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Limch1Q3UH68 Mir1199-201ENSMUST00000117015 119 ntBASIC20.65■□□□□ 0.9
Limch1Q3UH68 AC163280.1-201ENSMUST00000228194 1100 ntBASIC20.65■□□□□ 0.9
Limch1Q3UH68 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Limch1Q3UH68 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Limch1Q3UH68 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Limch1Q3UH68 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Limch1Q3UH68 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Limch1Q3UH68 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Limch1Q3UH68 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Limch1Q3UH68 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Limch1Q3UH68 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Limch1Q3UH68 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Limch1Q3UH68 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Limch1Q3UH68 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Limch1Q3UH68 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Limch1Q3UH68 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Limch1Q3UH68 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Limch1Q3UH68 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Limch1Q3UH68 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.89
Limch1Q3UH68 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Limch1Q3UH68 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Limch1Q3UH68 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC20.64■□□□□ 0.89
Limch1Q3UH68 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Limch1Q3UH68 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Limch1Q3UH68 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Limch1Q3UH68 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Limch1Q3UH68 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Limch1Q3UH68 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Limch1Q3UH68 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Limch1Q3UH68 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Limch1Q3UH68 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Limch1Q3UH68 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC20.63■□□□□ 0.89
Limch1Q3UH68 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC20.63■□□□□ 0.89
Limch1Q3UH68 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Limch1Q3UH68 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
Limch1Q3UH68 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC20.63■□□□□ 0.89
Limch1Q3UH68 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Limch1Q3UH68 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Limch1Q3UH68 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms