Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Ddb1Q3U1J4 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC22.39■■□□□ 1.17
Ddb1Q3U1J4 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC22.39■■□□□ 1.17
Ddb1Q3U1J4 Gm43347-201ENSMUST00000200226 580 ntBASIC22.39■■□□□ 1.17
Ddb1Q3U1J4 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC22.39■■□□□ 1.17
Ddb1Q3U1J4 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC22.39■■□□□ 1.17
Ddb1Q3U1J4 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC22.39■■□□□ 1.17
Ddb1Q3U1J4 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC22.39■■□□□ 1.17
Ddb1Q3U1J4 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Ddb1Q3U1J4 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
Ddb1Q3U1J4 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
Ddb1Q3U1J4 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
Ddb1Q3U1J4 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
Ddb1Q3U1J4 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ddb1Q3U1J4 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
Ddb1Q3U1J4 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ddb1Q3U1J4 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Ddb1Q3U1J4 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ddb1Q3U1J4 AC122351.1-201ENSMUST00000220467 126 ntBASIC22.38■■□□□ 1.17
Ddb1Q3U1J4 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ddb1Q3U1J4 Cxcl14-202ENSMUST00000224801 1467 ntBASIC22.38■■□□□ 1.17
Ddb1Q3U1J4 Gm42922-201ENSMUST00000195887 2078 ntBASIC22.38■■□□□ 1.17
Ddb1Q3U1J4 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ddb1Q3U1J4 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ddb1Q3U1J4 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ddb1Q3U1J4 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Ddb1Q3U1J4 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Ddb1Q3U1J4 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC22.36■■□□□ 1.17
Ddb1Q3U1J4 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Ddb1Q3U1J4 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Ddb1Q3U1J4 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC22.36■■□□□ 1.17
Ddb1Q3U1J4 AC124569.2-201ENSMUST00000225998 818 ntBASIC22.36■■□□□ 1.17
Ddb1Q3U1J4 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Ddb1Q3U1J4 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Ddb1Q3U1J4 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC22.36■■□□□ 1.17
Ddb1Q3U1J4 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Ddb1Q3U1J4 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Ddb1Q3U1J4 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 Gm6277-202ENSMUST00000224036 2779 ntBASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ddb1Q3U1J4 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Ddb1Q3U1J4 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Ddb1Q3U1J4 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Ddb1Q3U1J4 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Ddb1Q3U1J4 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
Ddb1Q3U1J4 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
Ddb1Q3U1J4 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
Ddb1Q3U1J4 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Ddb1Q3U1J4 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Ddb1Q3U1J4 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Ddb1Q3U1J4 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Ddb1Q3U1J4 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Ddb1Q3U1J4 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Ddb1Q3U1J4 Gm12895-201ENSMUST00000122214 226 ntBASIC22.33■■□□□ 1.17
Ddb1Q3U1J4 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC22.33■■□□□ 1.17
Ddb1Q3U1J4 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC22.33■■□□□ 1.17
Ddb1Q3U1J4 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC22.33■■□□□ 1.17
Ddb1Q3U1J4 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.17
Ddb1Q3U1J4 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Ddb1Q3U1J4 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Ddb1Q3U1J4 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Ddb1Q3U1J4 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
Ddb1Q3U1J4 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Ddb1Q3U1J4 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Ddb1Q3U1J4 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Ddb1Q3U1J4 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC22.32■■□□□ 1.16
Ddb1Q3U1J4 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Ddb1Q3U1J4 Gm18733-201ENSMUST00000173950 856 ntBASIC22.32■■□□□ 1.16
Ddb1Q3U1J4 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Ddb1Q3U1J4 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC22.32■■□□□ 1.16
Ddb1Q3U1J4 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms