Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC14.62□□□□□ -0.07
Hmgb3O54879 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC14.62□□□□□ -0.07
Hmgb3O54879 Gm7160-202ENSMUST00000188519 1027 ntBASIC14.62□□□□□ -0.07
Hmgb3O54879 Gm9194-201ENSMUST00000220749 1447 ntBASIC14.62□□□□□ -0.07
Hmgb3O54879 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Hmgb3O54879 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Hmgb3O54879 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
Hmgb3O54879 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Hmgb3O54879 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Hmgb3O54879 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Hmgb3O54879 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Hmgb3O54879 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
Hmgb3O54879 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Gm14117-201ENSMUST00000122417 843 ntBASIC14.61□□□□□ -0.07
Hmgb3O54879 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC14.61□□□□□ -0.07
Hmgb3O54879 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Hmgb3O54879 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Hmgb3O54879 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Hmgb3O54879 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Hmgb3O54879 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC14.6□□□□□ -0.07
Hmgb3O54879 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC14.6□□□□□ -0.07
Hmgb3O54879 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC14.6□□□□□ -0.07
Hmgb3O54879 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Hmgb3O54879 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC14.6□□□□□ -0.07
Hmgb3O54879 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Hmgb3O54879 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Hmgb3O54879 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Hmgb3O54879 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Hmgb3O54879 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Hmgb3O54879 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Hmgb3O54879 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Hmgb3O54879 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Hmgb3O54879 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC14.59□□□□□ -0.07
Hmgb3O54879 CT030146.1-201ENSMUST00000220919 217 ntBASIC14.59□□□□□ -0.07
Hmgb3O54879 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
Hmgb3O54879 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC14.59□□□□□ -0.07
Hmgb3O54879 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Hmgb3O54879 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Hmgb3O54879 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Hmgb3O54879 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Hmgb3O54879 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Hmgb3O54879 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
Hmgb3O54879 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Hmgb3O54879 Gm10167-201ENSMUST00000150411 1479 ntBASIC14.58□□□□□ -0.08
Hmgb3O54879 AC121961.1-201ENSMUST00000218594 1779 ntBASIC14.58□□□□□ -0.08
Hmgb3O54879 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Hmgb3O54879 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Hmgb3O54879 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Hmgb3O54879 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Hmgb3O54879 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Hmgb3O54879 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Hmgb3O54879 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Hmgb3O54879 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Hmgb3O54879 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Hmgb3O54879 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Hmgb3O54879 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Hmgb3O54879 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Hmgb3O54879 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Hmgb3O54879 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Hmgb3O54879 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Hmgb3O54879 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms