Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Gm27011-201ENSMUST00000182352 972 ntBASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Gm5408-201ENSMUST00000197998 747 ntBASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Pcdhgb8A0A140LI48 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Pcdhgb8A0A140LI48 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Gm8969-201ENSMUST00000199694 526 ntBASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC15.87■□□□□ 0.13
Pcdhgb8A0A140LI48 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC15.86■□□□□ 0.13
Pcdhgb8A0A140LI48 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC15.85■□□□□ 0.13
Pcdhgb8A0A140LI48 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Pcdhgb8A0A140LI48 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Pcdhgb8A0A140LI48 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Pcdhgb8A0A140LI48 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Pcdhgb8A0A140LI48 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Pcdhgb8A0A140LI48 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Pcdhgb8A0A140LI48 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC15.85■□□□□ 0.13
Pcdhgb8A0A140LI48 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC15.85■□□□□ 0.13
Pcdhgb8A0A140LI48 Gm26524-201ENSMUST00000192339 390 ntBASIC15.85■□□□□ 0.13
Pcdhgb8A0A140LI48 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Pcdhgb8A0A140LI48 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms