Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm37862-201ENSMUST00000193079 2533 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Vmn2r89-202ENSMUST00000159734 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
Hmgb3O54879 Igkv4-78-201ENSMUST00000103343 358 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm10241-201ENSMUST00000117664 286 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm15426-201ENSMUST00000117823 556 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm11822-201ENSMUST00000119177 415 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm14725-201ENSMUST00000120324 828 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm14601-201ENSMUST00000120892 236 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm14603-201ENSMUST00000121275 448 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm14649-201ENSMUST00000121814 324 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm5123-201ENSMUST00000121905 837 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm23430-201ENSMUST00000122490 314 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm9428-201ENSMUST00000127214 769 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm5755-201ENSMUST00000152394 837 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm22819-201ENSMUST00000157445 303 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm25456-201ENSMUST00000157952 109 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm23030-201ENSMUST00000158004 273 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm22261-201ENSMUST00000158691 324 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm6647-201ENSMUST00000170514 641 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm27039-201ENSMUST00000182438 962 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Mir7082-201ENSMUST00000183526 92 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm18348-201ENSMUST00000191227 820 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm37681-201ENSMUST00000193880 727 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm32051-201ENSMUST00000196818 709 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm44733-202ENSMUST00000209063 582 ntTSL 5 BASIC3.64□□□□□ -1.83
Hmgb3O54879 2500002B13Rik-202ENSMUST00000210752 298 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm35326-201ENSMUST00000218234 1041 ntTSL 5 BASIC3.64□□□□□ -1.83
Hmgb3O54879 AC101709.1-201ENSMUST00000220276 909 ntTSL 5 BASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm46401-201ENSMUST00000221291 1089 ntTSL 5 BASIC3.64□□□□□ -1.83
Hmgb3O54879 AC154335.2-201ENSMUST00000225916 638 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 BC028528-202ENSMUST00000090476 809 ntAPPRIS P3 TSL 2 BASIC3.64□□□□□ -1.83
Hmgb3O54879 4930567H17Rik-201ENSMUST00000092405 840 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
Hmgb3O54879 n-R5s152-201ENSMUST00000093641 119 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm32061-201ENSMUST00000207232 3478 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm7903-201ENSMUST00000113172 3677 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm5128-201ENSMUST00000113173 3677 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
Hmgb3O54879 Gm21854-202ENSMUST00000190391 1480 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
Hmgb3O54879 AL589737.1-201ENSMUST00000221163 2763 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
Hmgb3O54879 Vmn1r5-203ENSMUST00000228276 3188 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
Hmgb3O54879 Olfr330-202ENSMUST00000213188 2836 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
Hmgb3O54879 Fam46d-204ENSMUST00000167154 3004 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
Hmgb3O54879 Serpinb6c-201ENSMUST00000110273 1325 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
Hmgb3O54879 1700097M23Rik-201ENSMUST00000204079 1522 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 3110080E11Rik-201ENSMUST00000210736 3477 ntBASIC3.64□□□□□ -1.83
Hmgb3O54879 C2cd6-201ENSMUST00000097080 2131 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
Hmgb3O54879 Trappc13-205ENSMUST00000144060 3538 ntAPPRIS ALT1 TSL 1 (best) BASIC3.64□□□□□ -1.83
Hmgb3O54879 AC159308.1-201ENSMUST00000216615 1351 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Vmn1r84-205ENSMUST00000228653 2769 ntAPPRIS ALT2 BASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm8744-201ENSMUST00000204475 3581 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Gpr174-201ENSMUST00000101294 4614 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 Zfp595-203ENSMUST00000168892 4040 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm38057-201ENSMUST00000195551 3203 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Vmn2r-ps123-201ENSMUST00000176763 2410 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm26869-201ENSMUST00000181241 3523 ntTSL 2 BASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm38152-201ENSMUST00000195389 3566 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Olfr260-ps1-201ENSMUST00000117279 822 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm11893-201ENSMUST00000117829 491 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm14586-201ENSMUST00000119571 408 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm14714-201ENSMUST00000119743 439 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm12768-201ENSMUST00000120055 759 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm13932-201ENSMUST00000120873 610 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm24628-201ENSMUST00000122761 289 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm15517-201ENSMUST00000124863 251 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm12854-201ENSMUST00000128518 297 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 9030622O22Rik-201ENSMUST00000129082 1245 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm11579-201ENSMUST00000145502 845 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 1700080G11Rik-201ENSMUST00000156401 436 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 4930445N08Rik-201ENSMUST00000156925 313 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 Il3-201ENSMUST00000019058 629 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm37720-201ENSMUST00000195497 1241 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm43408-201ENSMUST00000198263 440 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 C430039J01Rik-201ENSMUST00000205973 957 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Olfr724-202ENSMUST00000213390 1152 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
Hmgb3O54879 Olfr228-201ENSMUST00000216534 942 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
Hmgb3O54879 AC158641.1-201ENSMUST00000218933 229 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 AL513022.1-201ENSMUST00000220489 504 ntTSL 5 BASIC3.63□□□□□ -1.83
Hmgb3O54879 AC192333.6-201ENSMUST00000224565 725 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 AC125539.2-202ENSMUST00000227983 587 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Gtpbp8-201ENSMUST00000023348 836 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 1110012L19Rik-201ENSMUST00000053981 1094 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 Csn1s2b-201ENSMUST00000072539 810 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm7665-201ENSMUST00000076710 297 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Olfr846-201ENSMUST00000078774 942 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
Hmgb3O54879 Olfr1168-201ENSMUST00000079599 939 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
Hmgb3O54879 Mir218-2-201ENSMUST00000083649 110 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Mir7-2-201ENSMUST00000083675 97 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Olfr390-201ENSMUST00000092919 936 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
Hmgb3O54879 n-R5s13-201ENSMUST00000093707 119 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Fpr-rs7-201ENSMUST00000095637 1017 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
Hmgb3O54879 Olfr1049-201ENSMUST00000099899 953 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
Hmgb3O54879 Platr23-201ENSMUST00000180797 2439 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 Hbp1-204ENSMUST00000175686 1315 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 Olfr1406-203ENSMUST00000215878 3149 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
Hmgb3O54879 Zfp433-201ENSMUST00000085664 1800 ntTSL 5 BASIC3.63□□□□□ -1.83
Hmgb3O54879 Obox4-ps27-201ENSMUST00000179203 1362 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Obox4-ps12-201ENSMUST00000180084 1362 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm43059-201ENSMUST00000202437 1388 ntBASIC3.63□□□□□ -1.83
Hmgb3O54879 Gm26650-204ENSMUST00000181881 2078 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
Hmgb3O54879 4930510E17Rik-201ENSMUST00000034550 1639 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
Hmgb3O54879 Vmn2r26-201ENSMUST00000032238 2568 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
Retrieved 100 of 76,532 protein–RNA pairs in 73.4 ms