Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cpsf3Q9QXK7 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
Cpsf3Q9QXK7 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cpsf3Q9QXK7 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Cpsf3Q9QXK7 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Cpsf3Q9QXK7 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cpsf3Q9QXK7 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC19.01■□□□□ 0.63
Cpsf3Q9QXK7 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Gm7712-202ENSMUST00000222331 1510 ntBASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Mir5122-201ENSMUST00000175004 89 ntBASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC19■□□□□ 0.63
Cpsf3Q9QXK7 AL672049.1-201ENSMUST00000197943 91 ntBASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Gm16042-201ENSMUST00000204813 1247 ntBASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Cpsf3Q9QXK7 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC19■□□□□ 0.63
Cpsf3Q9QXK7 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.99■□□□□ 0.63
Cpsf3Q9QXK7 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Gm10517-202ENSMUST00000192970 758 ntBASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cpsf3Q9QXK7 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Cpsf3Q9QXK7 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cpsf3Q9QXK7 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cpsf3Q9QXK7 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.97■□□□□ 0.63
Cpsf3Q9QXK7 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.97■□□□□ 0.63
Cpsf3Q9QXK7 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Cpsf3Q9QXK7 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cpsf3Q9QXK7 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cpsf3Q9QXK7 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cpsf3Q9QXK7 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Cpsf3Q9QXK7 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
Cpsf3Q9QXK7 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cpsf3Q9QXK7 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cpsf3Q9QXK7 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC18.96■□□□□ 0.63
Cpsf3Q9QXK7 Fam105a-203ENSMUST00000226170 3043 ntBASIC18.96■□□□□ 0.63
Cpsf3Q9QXK7 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC18.96■□□□□ 0.63
Cpsf3Q9QXK7 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC18.96■□□□□ 0.63
Cpsf3Q9QXK7 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
Cpsf3Q9QXK7 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cpsf3Q9QXK7 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cpsf3Q9QXK7 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cpsf3Q9QXK7 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cpsf3Q9QXK7 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cpsf3Q9QXK7 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cpsf3Q9QXK7 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cpsf3Q9QXK7 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.95■□□□□ 0.62
Cpsf3Q9QXK7 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cpsf3Q9QXK7 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Cpsf3Q9QXK7 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cpsf3Q9QXK7 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cpsf3Q9QXK7 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cpsf3Q9QXK7 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cpsf3Q9QXK7 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cpsf3Q9QXK7 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cpsf3Q9QXK7 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cpsf3Q9QXK7 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms