Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msh4Q99MT2 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Wnt10b-205ENSMUST00000226846 1204 ntBASIC17.16■□□□□ 0.34
Msh4Q99MT2 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Fcho2-208ENSMUST00000224992 2964 ntBASIC17.16■□□□□ 0.34
Msh4Q99MT2 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msh4Q99MT2 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Msh4Q99MT2 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Msh4Q99MT2 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.15■□□□□ 0.34
Msh4Q99MT2 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Flg-201ENSMUST00000050758 1488 ntBASIC17.15■□□□□ 0.34
Msh4Q99MT2 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msh4Q99MT2 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Msh4Q99MT2 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
Msh4Q99MT2 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msh4Q99MT2 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msh4Q99MT2 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Gm19439-201ENSMUST00000198195 2273 ntBASIC17.12■□□□□ 0.33
Msh4Q99MT2 Tgds-204ENSMUST00000228543 1594 ntBASIC17.12■□□□□ 0.33
Msh4Q99MT2 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms