Protein–RNA interactions for Protein: Q8CDY9

Pcdhb7, Protocadherin beta 7, mousemouse

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb7Q8CDY9 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Rab3c-203ENSMUST00000224180 967 ntBASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhb7Q8CDY9 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Gm44549-201ENSMUST00000208351 577 ntBASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhb7Q8CDY9 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC17.7■□□□□ 0.42
Pcdhb7Q8CDY9 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Gm26524-201ENSMUST00000192339 390 ntBASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 AC121598.2-201ENSMUST00000228376 2325 ntBASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.69■□□□□ 0.42
Pcdhb7Q8CDY9 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Gm2399-201ENSMUST00000104944 225 ntBASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Gm44672-201ENSMUST00000206944 1098 ntBASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhb7Q8CDY9 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdhb7Q8CDY9 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdhb7Q8CDY9 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms