Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trub1Q8C0D0 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Gm37856-201ENSMUST00000191634 999 ntBASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trub1Q8C0D0 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Trub1Q8C0D0 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 Gm11643-201ENSMUST00000119578 864 ntBASIC18.2■□□□□ 0.5
Trub1Q8C0D0 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trub1Q8C0D0 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trub1Q8C0D0 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trub1Q8C0D0 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.19■□□□□ 0.5
Trub1Q8C0D0 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trub1Q8C0D0 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
Trub1Q8C0D0 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trub1Q8C0D0 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC18.19■□□□□ 0.5
Trub1Q8C0D0 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trub1Q8C0D0 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.19■□□□□ 0.5
Trub1Q8C0D0 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trub1Q8C0D0 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trub1Q8C0D0 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trub1Q8C0D0 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trub1Q8C0D0 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trub1Q8C0D0 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC18.17■□□□□ 0.5
Trub1Q8C0D0 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.17■□□□□ 0.5
Trub1Q8C0D0 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.17■□□□□ 0.5
Trub1Q8C0D0 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Trub1Q8C0D0 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Trmt13-210ENSMUST00000198454 880 ntBASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
Trub1Q8C0D0 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trub1Q8C0D0 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms