Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.77■□□□□ 0.76
Usp49Q6P9L4 AC125311.2-201ENSMUST00000227477 1940 ntBASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Gm8969-201ENSMUST00000199694 526 ntBASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Gm10138-203ENSMUST00000206952 366 ntBASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp49Q6P9L4 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
Usp49Q6P9L4 Gm43294-201ENSMUST00000202850 2490 ntBASIC19.77■□□□□ 0.75
Usp49Q6P9L4 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Usp49Q6P9L4 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Gm15375-201ENSMUST00000119510 849 ntBASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
Usp49Q6P9L4 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Usp49Q6P9L4 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Usp49Q6P9L4 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
Usp49Q6P9L4 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp49Q6P9L4 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp49Q6P9L4 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp49Q6P9L4 Mir8112-201ENSMUST00000184382 131 ntBASIC19.75■□□□□ 0.75
Usp49Q6P9L4 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC19.75■□□□□ 0.75
Usp49Q6P9L4 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp49Q6P9L4 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Usp49Q6P9L4 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Usp49Q6P9L4 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Usp49Q6P9L4 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp49Q6P9L4 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp49Q6P9L4 Gm43808-201ENSMUST00000202534 2065 ntBASIC19.74■□□□□ 0.75
Usp49Q6P9L4 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp49Q6P9L4 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp49Q6P9L4 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Usp49Q6P9L4 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Usp49Q6P9L4 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Usp49Q6P9L4 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Usp49Q6P9L4 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp49Q6P9L4 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp49Q6P9L4 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.74■□□□□ 0.75
Usp49Q6P9L4 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Usp49Q6P9L4 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp49Q6P9L4 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Mir6349-201ENSMUST00000184059 97 ntBASIC19.72■□□□□ 0.75
Usp49Q6P9L4 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp49Q6P9L4 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms