Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-3Q5R1E6 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-3Q5R1E6 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-3Q5R1E6 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-3Q5R1E6 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-3Q5R1E6 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Zfp783-201ENSMUST00000095946 670 ntBASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 AC108858.1-201ENSMUST00000228461 1498 ntBASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-3Q5R1E6 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Gm37519-201ENSMUST00000191687 2210 ntBASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Gm44549-201ENSMUST00000208351 577 ntBASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Wnt10b-205ENSMUST00000226846 1204 ntBASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6-3Q5R1E6 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Mir8112-201ENSMUST00000184382 131 ntBASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Flg-201ENSMUST00000050758 1488 ntBASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6-3Q5R1E6 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Gm18284-201ENSMUST00000172604 624 ntBASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6-3Q5R1E6 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms