Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf3aQ3ULJ3 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Gm17661-201ENSMUST00000170317 270 ntBASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Il3ra-202ENSMUST00000223589 738 ntBASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3aQ3ULJ3 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Mir1668-201ENSMUST00000184114 107 ntBASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Gm9731-201ENSMUST00000209480 747 ntBASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3aQ3ULJ3 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.55■□□□□ 0.56
Upf3aQ3ULJ3 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC18.55■□□□□ 0.56
Upf3aQ3ULJ3 Gm9103-201ENSMUST00000119371 405 ntBASIC18.55■□□□□ 0.56
Upf3aQ3ULJ3 Gm27389-201ENSMUST00000183622 195 ntBASIC18.55■□□□□ 0.56
Upf3aQ3ULJ3 Gm37025-201ENSMUST00000195159 829 ntBASIC18.55■□□□□ 0.56
Upf3aQ3ULJ3 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3aQ3ULJ3 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3aQ3ULJ3 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3aQ3ULJ3 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Upf3aQ3ULJ3 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3aQ3ULJ3 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3aQ3ULJ3 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3aQ3ULJ3 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3aQ3ULJ3 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC18.54■□□□□ 0.56
Upf3aQ3ULJ3 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Upf3aQ3ULJ3 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.54■□□□□ 0.56
Upf3aQ3ULJ3 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.54■□□□□ 0.56
Upf3aQ3ULJ3 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.54■□□□□ 0.56
Upf3aQ3ULJ3 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC18.54■□□□□ 0.56
Upf3aQ3ULJ3 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Upf3aQ3ULJ3 Gm43213-201ENSMUST00000151866 1790 ntBASIC18.54■□□□□ 0.56
Upf3aQ3ULJ3 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf3aQ3ULJ3 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Upf3aQ3ULJ3 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Upf3aQ3ULJ3 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Gm5587-201ENSMUST00000206270 674 ntBASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3aQ3ULJ3 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC18.52■□□□□ 0.56
Upf3aQ3ULJ3 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Upf3aQ3ULJ3 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3aQ3ULJ3 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3aQ3ULJ3 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Upf3aQ3ULJ3 Gm7284-201ENSMUST00000131667 944 ntBASIC18.52■□□□□ 0.56
Upf3aQ3ULJ3 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC18.52■□□□□ 0.56
Upf3aQ3ULJ3 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3aQ3ULJ3 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3aQ3ULJ3 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Upf3aQ3ULJ3 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3aQ3ULJ3 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3aQ3ULJ3 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3aQ3ULJ3 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC18.51■□□□□ 0.55
Upf3aQ3ULJ3 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms