Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb1P63158 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb1P63158 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb1P63158 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgb1P63158 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgb1P63158 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgb1P63158 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgb1P63158 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgb1P63158 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgb1P63158 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgb1P63158 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgb1P63158 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgb1P63158 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb1P63158 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Hmgb1P63158 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC19.39■□□□□ 0.69
Hmgb1P63158 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC19.39■□□□□ 0.69
Hmgb1P63158 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Hmgb1P63158 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb1P63158 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
Hmgb1P63158 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.39■□□□□ 0.69
Hmgb1P63158 AC108858.1-201ENSMUST00000228461 1498 ntBASIC19.39■□□□□ 0.69
Hmgb1P63158 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb1P63158 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb1P63158 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb1P63158 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb1P63158 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.39■□□□□ 0.69
Hmgb1P63158 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb1P63158 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb1P63158 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb1P63158 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb1P63158 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb1P63158 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb1P63158 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Hmgb1P63158 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.38■□□□□ 0.69
Hmgb1P63158 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb1P63158 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC19.38■□□□□ 0.69
Hmgb1P63158 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb1P63158 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC19.38■□□□□ 0.69
Hmgb1P63158 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Hmgb1P63158 Gm29791-202ENSMUST00000207888 369 ntBASIC19.38■□□□□ 0.69
Hmgb1P63158 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC19.38■□□□□ 0.69
Hmgb1P63158 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb1P63158 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb1P63158 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb1P63158 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb1P63158 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb1P63158 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb1P63158 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb1P63158 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb1P63158 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb1P63158 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb1P63158 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb1P63158 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb1P63158 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb1P63158 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb1P63158 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb1P63158 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Hmgb1P63158 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb1P63158 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb1P63158 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.37■□□□□ 0.69
Hmgb1P63158 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb1P63158 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb1P63158 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.36■□□□□ 0.69
Hmgb1P63158 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Hmgb1P63158 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC19.36■□□□□ 0.69
Hmgb1P63158 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb1P63158 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.36■□□□□ 0.69
Hmgb1P63158 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb1P63158 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb1P63158 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb1P63158 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb1P63158 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb1P63158 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb1P63158 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Hmgb1P63158 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb1P63158 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC19.35■□□□□ 0.69
Hmgb1P63158 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.35■□□□□ 0.69
Hmgb1P63158 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC19.35■□□□□ 0.69
Hmgb1P63158 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb1P63158 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb1P63158 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb1P63158 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.35■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms