Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shmt1P50431 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shmt1P50431 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Shmt1P50431 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shmt1P50431 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shmt1P50431 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Shmt1P50431 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Shmt1P50431 Gm15565-201ENSMUST00000118890 427 ntBASIC18.67■□□□□ 0.58
Shmt1P50431 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.67■□□□□ 0.58
Shmt1P50431 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shmt1P50431 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shmt1P50431 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shmt1P50431 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shmt1P50431 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC18.67■□□□□ 0.58
Shmt1P50431 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shmt1P50431 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.66■□□□□ 0.58
Shmt1P50431 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shmt1P50431 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.66■□□□□ 0.58
Shmt1P50431 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shmt1P50431 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shmt1P50431 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Shmt1P50431 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Shmt1P50431 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC18.66■□□□□ 0.58
Shmt1P50431 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shmt1P50431 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.66■□□□□ 0.58
Shmt1P50431 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Shmt1P50431 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
Shmt1P50431 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Shmt1P50431 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shmt1P50431 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Shmt1P50431 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Shmt1P50431 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shmt1P50431 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Shmt1P50431 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Gm10418-201ENSMUST00000100943 576 ntBASIC18.65■□□□□ 0.58
Shmt1P50431 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Gm13836-201ENSMUST00000121159 501 ntBASIC18.65■□□□□ 0.58
Shmt1P50431 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.65■□□□□ 0.58
Shmt1P50431 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Shmt1P50431 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Shmt1P50431 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Shmt1P50431 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shmt1P50431 Gm20472-201ENSMUST00000174403 1240 ntBASIC18.64■□□□□ 0.57
Shmt1P50431 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC18.64■□□□□ 0.57
Shmt1P50431 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Shmt1P50431 Gm21814-202ENSMUST00000203277 873 ntBASIC18.64■□□□□ 0.57
Shmt1P50431 Arhgef4-208ENSMUST00000211073 171 ntBASIC18.64■□□□□ 0.57
Shmt1P50431 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC18.64■□□□□ 0.57
Shmt1P50431 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shmt1P50431 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Shmt1P50431 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shmt1P50431 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Shmt1P50431 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Shmt1P50431 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shmt1P50431 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Shmt1P50431 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shmt1P50431 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shmt1P50431 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
Shmt1P50431 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shmt1P50431 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shmt1P50431 Gm7977-201ENSMUST00000193787 748 ntBASIC18.63■□□□□ 0.57
Shmt1P50431 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Shmt1P50431 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shmt1P50431 Gm5417-201ENSMUST00000079706 384 ntBASIC18.63■□□□□ 0.57
Shmt1P50431 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Shmt1P50431 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shmt1P50431 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.63■□□□□ 0.57
Shmt1P50431 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
Shmt1P50431 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shmt1P50431 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shmt1P50431 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shmt1P50431 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shmt1P50431 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Shmt1P50431 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Shmt1P50431 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Shmt1P50431 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Shmt1P50431 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
Shmt1P50431 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shmt1P50431 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shmt1P50431 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Shmt1P50431 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Shmt1P50431 Gm4974-201ENSMUST00000209974 875 ntBASIC18.62■□□□□ 0.57
Shmt1P50431 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.62■□□□□ 0.57
Shmt1P50431 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shmt1P50431 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shmt1P50431 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Shmt1P50431 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Shmt1P50431 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms