Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lire1P11260 Gm37856-201ENSMUST00000191634 999 ntBASIC16.65■□□□□ 0.26
Lire1P11260 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Lire1P11260 Gm10812-201ENSMUST00000099864 546 ntBASIC16.65■□□□□ 0.26
Lire1P11260 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lire1P11260 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC16.65■□□□□ 0.26
Lire1P11260 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
Lire1P11260 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lire1P11260 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lire1P11260 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lire1P11260 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lire1P11260 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
Lire1P11260 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Lire1P11260 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Lire1P11260 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lire1P11260 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lire1P11260 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lire1P11260 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Lire1P11260 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lire1P11260 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lire1P11260 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lire1P11260 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Lire1P11260 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lire1P11260 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lire1P11260 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Lire1P11260 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Lire1P11260 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lire1P11260 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lire1P11260 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Lire1P11260 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lire1P11260 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Lire1P11260 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Lire1P11260 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Lire1P11260 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC16.63■□□□□ 0.25
Lire1P11260 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC16.63■□□□□ 0.25
Lire1P11260 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
Lire1P11260 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Lire1P11260 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lire1P11260 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lire1P11260 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Lire1P11260 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lire1P11260 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lire1P11260 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Lire1P11260 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Lire1P11260 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lire1P11260 Gm26524-201ENSMUST00000192339 390 ntBASIC16.62■□□□□ 0.25
Lire1P11260 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC16.62■□□□□ 0.25
Lire1P11260 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lire1P11260 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lire1P11260 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lire1P11260 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Lire1P11260 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lire1P11260 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lire1P11260 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lire1P11260 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lire1P11260 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC16.61■□□□□ 0.25
Lire1P11260 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Lire1P11260 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC16.61■□□□□ 0.25
Lire1P11260 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Lire1P11260 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Gm7860-201ENSMUST00000121190 879 ntBASIC16.61■□□□□ 0.25
Lire1P11260 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC16.61■□□□□ 0.25
Lire1P11260 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC16.61■□□□□ 0.25
Lire1P11260 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Trmt13-210ENSMUST00000198454 880 ntBASIC16.61■□□□□ 0.25
Lire1P11260 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Rab3c-203ENSMUST00000224180 967 ntBASIC16.61■□□□□ 0.25
Lire1P11260 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lire1P11260 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Lire1P11260 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC16.61■□□□□ 0.25
Lire1P11260 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lire1P11260 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lire1P11260 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lire1P11260 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lire1P11260 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms