Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col3a1P08121 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col3a1P08121 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col3a1P08121 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col3a1P08121 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC21.13■□□□□ 0.97
Col3a1P08121 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col3a1P08121 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col3a1P08121 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col3a1P08121 Gm22697-201ENSMUST00000175194 63 ntBASIC21.13■□□□□ 0.97
Col3a1P08121 Gm6728-201ENSMUST00000178117 1065 ntBASIC21.13■□□□□ 0.97
Col3a1P08121 Gm27741-201ENSMUST00000185060 237 ntBASIC21.13■□□□□ 0.97
Col3a1P08121 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col3a1P08121 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col3a1P08121 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col3a1P08121 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col3a1P08121 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC21.12■□□□□ 0.97
Col3a1P08121 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col3a1P08121 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col3a1P08121 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col3a1P08121 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col3a1P08121 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col3a1P08121 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col3a1P08121 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col3a1P08121 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
Col3a1P08121 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Col3a1P08121 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
Col3a1P08121 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col3a1P08121 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col3a1P08121 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col3a1P08121 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC21.11■□□□□ 0.97
Col3a1P08121 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col3a1P08121 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col3a1P08121 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
Col3a1P08121 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col3a1P08121 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Col3a1P08121 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Col3a1P08121 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col3a1P08121 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Col3a1P08121 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Col3a1P08121 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col3a1P08121 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col3a1P08121 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col3a1P08121 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
Col3a1P08121 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC21.1■□□□□ 0.97
Col3a1P08121 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC21.1■□□□□ 0.97
Col3a1P08121 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col3a1P08121 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Col3a1P08121 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col3a1P08121 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col3a1P08121 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC21.1■□□□□ 0.97
Col3a1P08121 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col3a1P08121 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col3a1P08121 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col3a1P08121 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col3a1P08121 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Col3a1P08121 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Col3a1P08121 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col3a1P08121 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col3a1P08121 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col3a1P08121 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col3a1P08121 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col3a1P08121 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
Col3a1P08121 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Col3a1P08121 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col3a1P08121 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col3a1P08121 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.09■□□□□ 0.97
Col3a1P08121 Spsb2-203ENSMUST00000112473 1322 ntBASIC21.09■□□□□ 0.97
Col3a1P08121 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC21.09■□□□□ 0.97
Col3a1P08121 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col3a1P08121 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Col3a1P08121 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col3a1P08121 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col3a1P08121 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col3a1P08121 Gm33142-201ENSMUST00000193913 867 ntBASIC21.08■□□□□ 0.97
Col3a1P08121 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Col3a1P08121 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
Col3a1P08121 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col3a1P08121 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Col3a1P08121 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC21.08■□□□□ 0.96
Col3a1P08121 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC21.07■□□□□ 0.96
Col3a1P08121 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC21.07■□□□□ 0.96
Col3a1P08121 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Gm5828-201ENSMUST00000071842 1860 ntBASIC21.07■□□□□ 0.96
Col3a1P08121 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC21.07■□□□□ 0.96
Col3a1P08121 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Col3a1P08121 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col3a1P08121 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms