Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sdc4O35988 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC18.18■□□□□ 0.5
Sdc4O35988 Gm9987-201ENSMUST00000069768 567 ntBASIC18.18■□□□□ 0.5
Sdc4O35988 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Sdc4O35988 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Sdc4O35988 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Sdc4O35988 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sdc4O35988 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Sdc4O35988 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sdc4O35988 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Sdc4O35988 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
Sdc4O35988 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.17■□□□□ 0.5
Sdc4O35988 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Sdc4O35988 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Sdc4O35988 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.17■□□□□ 0.5
Sdc4O35988 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sdc4O35988 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sdc4O35988 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.17■□□□□ 0.5
Sdc4O35988 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sdc4O35988 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Sdc4O35988 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.17■□□□□ 0.5
Sdc4O35988 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sdc4O35988 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sdc4O35988 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sdc4O35988 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Sdc4O35988 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sdc4O35988 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sdc4O35988 Gm12085-201ENSMUST00000119263 940 ntBASIC18.16■□□□□ 0.5
Sdc4O35988 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sdc4O35988 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sdc4O35988 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sdc4O35988 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Sdc4O35988 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Sdc4O35988 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.16■□□□□ 0.5
Sdc4O35988 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Sdc4O35988 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sdc4O35988 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Sdc4O35988 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sdc4O35988 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sdc4O35988 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Sdc4O35988 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC18.15■□□□□ 0.5
Sdc4O35988 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Sdc4O35988 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.15■□□□□ 0.5
Sdc4O35988 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Sdc4O35988 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.15■□□□□ 0.5
Sdc4O35988 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 AC123834.2-201ENSMUST00000224038 2340 ntBASIC18.15■□□□□ 0.5
Sdc4O35988 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Sdc4O35988 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Sdc4O35988 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sdc4O35988 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Sdc4O35988 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Sdc4O35988 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
Sdc4O35988 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Sdc4O35988 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sdc4O35988 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sdc4O35988 Gm7977-201ENSMUST00000193787 748 ntBASIC18.14■□□□□ 0.49
Sdc4O35988 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sdc4O35988 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sdc4O35988 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sdc4O35988 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sdc4O35988 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sdc4O35988 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC18.14■□□□□ 0.49
Sdc4O35988 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sdc4O35988 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sdc4O35988 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Sdc4O35988 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Sdc4O35988 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Sdc4O35988 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sdc4O35988 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sdc4O35988 Gm35558-201ENSMUST00000222675 2219 ntBASIC18.13■□□□□ 0.49
Sdc4O35988 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sdc4O35988 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC18.13■□□□□ 0.49
Sdc4O35988 Gm11539-201ENSMUST00000119837 557 ntBASIC18.13■□□□□ 0.49
Sdc4O35988 Gm13436-201ENSMUST00000120418 567 ntBASIC18.13■□□□□ 0.49
Sdc4O35988 Gm13559-201ENSMUST00000120476 863 ntBASIC18.13■□□□□ 0.49
Sdc4O35988 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Sdc4O35988 Gm27463-201ENSMUST00000183569 57 ntBASIC18.13■□□□□ 0.49
Sdc4O35988 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC18.13■□□□□ 0.49
Sdc4O35988 AC121577.1-201ENSMUST00000227302 707 ntBASIC18.13■□□□□ 0.49
Sdc4O35988 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sdc4O35988 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sdc4O35988 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Sdc4O35988 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sdc4O35988 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Sdc4O35988 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Sdc4O35988 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms