Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Gm13148-201ENSMUST00000118892 745 ntBASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Pcdhgb8A0A140LI48 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Pcdhgb8A0A140LI48 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 AC112142.1-201ENSMUST00000228796 918 ntBASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 AC131586.2-201ENSMUST00000228370 1512 ntBASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Pcdhgb8A0A140LI48 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Gm43338-201ENSMUST00000198617 2223 ntBASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Pcdhgb8A0A140LI48 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Pcdhgb8A0A140LI48 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms