Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
Trav6-1A0A075B5Z8 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trav6-1A0A075B5Z8 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC14.21□□□□□ -0.14
Trav6-1A0A075B5Z8 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav6-1A0A075B5Z8 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav6-1A0A075B5Z8 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav6-1A0A075B5Z8 Gm10129-202ENSMUST00000193100 1316 ntBASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Mir8112-201ENSMUST00000184382 131 ntBASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Gm6420-201ENSMUST00000193885 723 ntBASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav6-1A0A075B5Z8 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Haglr-201ENSMUST00000100000 2085 ntBASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6-1A0A075B5Z8 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms