Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm29592-201ENSMUST00000189434 370 ntBASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm29409-202ENSMUST00000189623 901 ntTSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm28690-202ENSMUST00000190325 622 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm28456-202ENSMUST00000190521 622 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm28834-202ENSMUST00000190714 537 ntTSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm28325-202ENSMUST00000191481 622 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm29132-202ENSMUST00000191588 622 ntTSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm30174-201ENSMUST00000191682 537 ntTSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm36261-201ENSMUST00000191807 537 ntTSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm35070-201ENSMUST00000192589 621 ntTSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm18553-201ENSMUST00000194152 634 ntBASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm34550-202ENSMUST00000195186 537 ntTSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm30686-202ENSMUST00000195371 621 ntTSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm30353-202ENSMUST00000195486 622 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm36467-202ENSMUST00000195606 622 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 AI506816-203ENSMUST00000198461 503 ntTSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm34701-202ENSMUST00000204685 360 ntBASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm17984-201ENSMUST00000205286 859 ntBASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Olfr907-202ENSMUST00000214003 1235 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Olfr697-202ENSMUST00000217734 1190 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 AC127337.1-201ENSMUST00000220423 625 ntTSL 2 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 AC156572.1-201ENSMUST00000221040 1161 ntTSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 AC141884.1-201ENSMUST00000226327 636 ntBASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Rnase12-202ENSMUST00000227764 673 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 AC133283.1-201ENSMUST00000228443 859 ntBASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Il6-201ENSMUST00000026845 1141 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Rnase12-201ENSMUST00000089798 545 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Spata22-202ENSMUST00000092926 1274 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Eif2s2-205ENSMUST00000166171 2312 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Platr25-202ENSMUST00000220733 2859 ntAPPRIS P5 TSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm43025-201ENSMUST00000201764 1886 ntBASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 2410012E07Rik-201ENSMUST00000190896 1357 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Olfr491-202ENSMUST00000209545 1944 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Olfr690-202ENSMUST00000211006 2048 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Vmn2r28-201ENSMUST00000086297 3785 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Hgf-201ENSMUST00000030683 2642 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Hdlbp-204ENSMUST00000186164 3808 ntTSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm26835-201ENSMUST00000181888 3274 ntTSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Gm15457-201ENSMUST00000129513 3990 ntTSL 2 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Chd9-202ENSMUST00000109614 11565 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
Ubfd1Q78JW9 Pigb-201ENSMUST00000093819 2866 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Olfr1505-202ENSMUST00000216623 3567 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm15182-201ENSMUST00000120832 1676 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Olfr586-203ENSMUST00000213281 5001 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 AC132336.1-201ENSMUST00000222844 1740 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Cyp2c70-201ENSMUST00000051846 1717 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Olfr430-202ENSMUST00000213425 3873 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Ryr3-210ENSMUST00000208151 15370 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Vmn1r200-205ENSMUST00000228726 5525 ntAPPRIS P2 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 G930045G22Rik-201ENSMUST00000101402 480 ntTSL 5 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Trbv20-201ENSMUST00000103277 335 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Olfr1288-201ENSMUST00000104889 939 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 1700006E09Rik-201ENSMUST00000010985 698 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm13488-201ENSMUST00000120419 179 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm14601-201ENSMUST00000120892 236 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm23883-201ENSMUST00000122686 290 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Vmn1r239-ps-201ENSMUST00000127465 960 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gtsf1-205ENSMUST00000141364 700 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Mir1963-201ENSMUST00000158594 59 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gas5-209ENSMUST00000159663 346 ntTSL 3 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Vmn1r170-201ENSMUST00000170166 915 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm17160-201ENSMUST00000170645 260 ntTSL 3 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm29454-201ENSMUST00000190805 393 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Igkv15-101-201ENSMUST00000195917 299 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm42452-201ENSMUST00000199749 617 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm5317-201ENSMUST00000204445 847 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm44738-201ENSMUST00000206393 371 ntTSL 2 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Olfr1310-201ENSMUST00000207169 1009 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm45189-201ENSMUST00000208567 363 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm46103-201ENSMUST00000217614 341 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm5457-201ENSMUST00000022260 333 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 A930023M06Rik-201ENSMUST00000223270 1093 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 CT030195.1-201ENSMUST00000223887 378 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Tmed11-201ENSMUST00000004943 763 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Olfr813-201ENSMUST00000064893 933 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Orm3-201ENSMUST00000006687 773 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Fxyd3-201ENSMUST00000072331 439 ntTSL 2 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Olfr1507-201ENSMUST00000073571 1112 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Tpbpb-201ENSMUST00000080766 850 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 mt-Co2-201ENSMUST00000082405 684 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Pls3-203ENSMUST00000114058 3032 ntTSL 5 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Rgs2-202ENSMUST00000127206 3021 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm2366-201ENSMUST00000180753 3982 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Naalad2-207ENSMUST00000172171 4066 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Tc2n-202ENSMUST00000160715 1386 ntTSL 5 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Flrt2-201ENSMUST00000057324 7099 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Fat1-203ENSMUST00000189017 14651 ntTSL 5 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Trps1-203ENSMUST00000183421 3446 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Serpinb6e-201ENSMUST00000110275 1494 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Olfr1026-203ENSMUST00000219615 1465 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Clec4a2-202ENSMUST00000041779 2481 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Vmn2r79-201ENSMUST00000164462 2556 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Gm7648-201ENSMUST00000173036 1658 ntBASIC5.37□□□□□ -1.55
Ubfd1Q78JW9 Mier1-202ENSMUST00000097945 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
Ubfd1Q78JW9 3110067C02Rik-201ENSMUST00000120793 2117 ntBASIC5.36□□□□□ -1.55
Ubfd1Q78JW9 A230107N01Rik-201ENSMUST00000180894 2348 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
Ubfd1Q78JW9 Vmn1r80-206ENSMUST00000228028 6918 ntBASIC5.36□□□□□ -1.55
Ubfd1Q78JW9 Scn2a-201ENSMUST00000028377 8935 ntAPPRIS P3 TSL 5 BASIC5.36□□□□□ -1.55
Ubfd1Q78JW9 Pum2-201ENSMUST00000020915 3587 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
Ubfd1Q78JW9 Vmn2r42-201ENSMUST00000086282 3623 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
Retrieved 100 of 76,532 protein–RNA pairs in 70.7 ms