Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn11aQ9R053 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn11aQ9R053 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Scn11aQ9R053 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn11aQ9R053 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn11aQ9R053 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn11aQ9R053 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Scn11aQ9R053 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Scn11aQ9R053 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn11aQ9R053 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
Scn11aQ9R053 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Scn11aQ9R053 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Scn11aQ9R053 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn11aQ9R053 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Scn11aQ9R053 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Scn11aQ9R053 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn11aQ9R053 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
Scn11aQ9R053 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Scn11aQ9R053 Gm18958-201ENSMUST00000174258 762 ntBASIC21.08■□□□□ 0.97
Scn11aQ9R053 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC21.08■□□□□ 0.97
Scn11aQ9R053 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC21.08■□□□□ 0.97
Scn11aQ9R053 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Scn11aQ9R053 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Scn11aQ9R053 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.08■□□□□ 0.96
Scn11aQ9R053 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Scn11aQ9R053 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC21.08■□□□□ 0.96
Scn11aQ9R053 Gm2274-201ENSMUST00000184539 609 ntBASIC21.08■□□□□ 0.96
Scn11aQ9R053 Gm5867-201ENSMUST00000063197 592 ntBASIC21.08■□□□□ 0.96
Scn11aQ9R053 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Scn11aQ9R053 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Scn11aQ9R053 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC21.07■□□□□ 0.96
Scn11aQ9R053 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Scn11aQ9R053 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Scn11aQ9R053 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Scn11aQ9R053 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Scn11aQ9R053 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Scn11aQ9R053 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.07■□□□□ 0.96
Scn11aQ9R053 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Scn11aQ9R053 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn11aQ9R053 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC21.06■□□□□ 0.96
Scn11aQ9R053 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn11aQ9R053 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Scn11aQ9R053 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Scn11aQ9R053 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn11aQ9R053 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC21.06■□□□□ 0.96
Scn11aQ9R053 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn11aQ9R053 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn11aQ9R053 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn11aQ9R053 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn11aQ9R053 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn11aQ9R053 Fst-202ENSMUST00000223640 2612 ntBASIC21.06■□□□□ 0.96
Scn11aQ9R053 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Scn11aQ9R053 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC21.05■□□□□ 0.96
Scn11aQ9R053 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn11aQ9R053 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Umpk-ps-201ENSMUST00000211897 827 ntBASIC21.05■□□□□ 0.96
Scn11aQ9R053 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Scn11aQ9R053 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Scn11aQ9R053 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Scn11aQ9R053 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Scn11aQ9R053 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Scn11aQ9R053 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Scn11aQ9R053 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Scn11aQ9R053 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Scn11aQ9R053 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Scn11aQ9R053 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Scn11aQ9R053 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Scn11aQ9R053 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scn11aQ9R053 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scn11aQ9R053 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
Scn11aQ9R053 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC21.03■□□□□ 0.96
Scn11aQ9R053 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scn11aQ9R053 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC21.03■□□□□ 0.96
Scn11aQ9R053 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scn11aQ9R053 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Scn11aQ9R053 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC21.03■□□□□ 0.96
Scn11aQ9R053 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scn11aQ9R053 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scn11aQ9R053 Gm7153-201ENSMUST00000117092 455 ntBASIC21.02■□□□□ 0.96
Scn11aQ9R053 Mir5130-201ENSMUST00000175160 84 ntBASIC21.02■□□□□ 0.96
Scn11aQ9R053 Gm28033-201ENSMUST00000184224 96 ntBASIC21.02■□□□□ 0.96
Scn11aQ9R053 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scn11aQ9R053 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Scn11aQ9R053 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scn11aQ9R053 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scn11aQ9R053 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scn11aQ9R053 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 11.2 ms