Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim54Q9ERP3 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim54Q9ERP3 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
Trim54Q9ERP3 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim54Q9ERP3 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Trim54Q9ERP3 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.14■□□□□ 0.65
Trim54Q9ERP3 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim54Q9ERP3 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim54Q9ERP3 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Trim54Q9ERP3 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim54Q9ERP3 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim54Q9ERP3 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim54Q9ERP3 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Gm37820-201ENSMUST00000194021 2147 ntBASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Gm38027-201ENSMUST00000192315 235 ntBASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim54Q9ERP3 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim54Q9ERP3 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim54Q9ERP3 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim54Q9ERP3 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim54Q9ERP3 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC19.11■□□□□ 0.65
Trim54Q9ERP3 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Trim54Q9ERP3 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC19.11■□□□□ 0.65
Trim54Q9ERP3 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim54Q9ERP3 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim54Q9ERP3 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim54Q9ERP3 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim54Q9ERP3 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim54Q9ERP3 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
Trim54Q9ERP3 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.1■□□□□ 0.65
Trim54Q9ERP3 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim54Q9ERP3 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim54Q9ERP3 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC19.1■□□□□ 0.65
Trim54Q9ERP3 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim54Q9ERP3 Gm27463-201ENSMUST00000183569 57 ntBASIC19.1■□□□□ 0.65
Trim54Q9ERP3 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC19.1■□□□□ 0.65
Trim54Q9ERP3 Gm43353-201ENSMUST00000199224 1295 ntBASIC19.1■□□□□ 0.65
Trim54Q9ERP3 Gm18959-201ENSMUST00000208954 655 ntBASIC19.1■□□□□ 0.65
Trim54Q9ERP3 Gm4974-201ENSMUST00000209974 875 ntBASIC19.1■□□□□ 0.65
Trim54Q9ERP3 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim54Q9ERP3 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim54Q9ERP3 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim54Q9ERP3 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim54Q9ERP3 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim54Q9ERP3 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Trim54Q9ERP3 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim54Q9ERP3 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
Trim54Q9ERP3 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim54Q9ERP3 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim54Q9ERP3 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC19.09■□□□□ 0.65
Trim54Q9ERP3 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC19.09■□□□□ 0.65
Trim54Q9ERP3 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim54Q9ERP3 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
Trim54Q9ERP3 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim54Q9ERP3 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trim54Q9ERP3 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trim54Q9ERP3 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC19.09■□□□□ 0.65
Trim54Q9ERP3 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Trim54Q9ERP3 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms