Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdc40Q9DC48 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Cdc40Q9DC48 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cdc40Q9DC48 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Cdc40Q9DC48 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdc40Q9DC48 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cdc40Q9DC48 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Rarb-207ENSMUST00000225921 2756 ntBASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cdc40Q9DC48 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Cdc40Q9DC48 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cdc40Q9DC48 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cdc40Q9DC48 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Cdc40Q9DC48 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cdc40Q9DC48 Gm13158-201ENSMUST00000122007 736 ntBASIC16.42■□□□□ 0.22
Cdc40Q9DC48 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cdc40Q9DC48 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cdc40Q9DC48 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cdc40Q9DC48 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cdc40Q9DC48 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC16.42■□□□□ 0.22
Cdc40Q9DC48 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Gm5953-201ENSMUST00000220644 2616 ntBASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 AC154649.1-201ENSMUST00000227392 384 ntBASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC16.41■□□□□ 0.22
Cdc40Q9DC48 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdc40Q9DC48 Tgds-204ENSMUST00000228543 1594 ntBASIC16.4■□□□□ 0.22
Cdc40Q9DC48 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdc40Q9DC48 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Cdc40Q9DC48 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC16.4■□□□□ 0.22
Cdc40Q9DC48 Gm15378-201ENSMUST00000121894 207 ntBASIC16.4■□□□□ 0.22
Cdc40Q9DC48 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Cdc40Q9DC48 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Cdc40Q9DC48 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdc40Q9DC48 Flg-201ENSMUST00000050758 1488 ntBASIC16.4■□□□□ 0.22
Cdc40Q9DC48 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Cdc40Q9DC48 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdc40Q9DC48 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdc40Q9DC48 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdc40Q9DC48 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Cdc40Q9DC48 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdc40Q9DC48 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdc40Q9DC48 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms